Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01091 ATGGCTTCGCATCCTAAAAATGTGGGAATCCTTGCCATGGACATTTACTTCCCTCCTACTTGCGTGCAGCAGGAAGCTTTGGAGGCTCATGATGGCGCaagcaaaggaaaatataCTATTGGGCTTGGACAAGATTGCATGGCATTCTGTAGTGAGGTAGAAGATGTTATCTCAATGAGTTTGACAGTTGTTGCTTCActtcttgaaaaatttaaaatcgaCCCAAAGCAAATTGGACGATTGGAAGTTGGCAGTGAGACTGTGATTGACAAGAGCAAATCCATTAAGACATTCCTTATGCAAATTTTCGAGGAGAATGGTAATACTGACATTGAAGGCGTTGATTCAACAAATGCATGCTATGGTGGAACAGCAGCTTTGTTCAATTGTGCAAATTGGGTGGAGAGTAGTTCATGGGATGGGCGCTATGGACTTGTTGTATGCACAGACAGTGCGGTATATGCAGAAGGACCTGCACGTCCCACTGGAGGAGCAGCTGCTATTGCCATGCTGATAGGGCCAGATGCTCCTATTGTGTTTGAAAGCAAATTCAGAGCCAGTCATATGTCTCATGCATATGATTTTTACAAGCCAAACCTTGCAAGTGAATACCCAGTTGTTGACGGGAAGCTCTCTCAGACTTGTTATCTCATGGCACTTGATTCCTGCTATAAGCGTTTTTGTGAGAAATTTGAAAAATTGGAAGGGAGGCTGTTTTCTATAGCAGATTCTGattattttgtgtttcattCTCCATATAACAAGCTTGTACAAAAAAGTTTTGGTCGGCTATACTTCAATGATTTCCTTACAAAACCCAGTTTTGTTGATGAAATAGCTAGAGGAACCCTATCACCTTTTGCATCCCTATCCAGTGATGAGAGCTATCAGAGCCGTGATCTTGAAAAGGCAAGCCAGCAAGCTTCCAAACATACATATGATGTCAAGGTGCAACCCACTACATTAATCCCAAAACAAGTTGGTAATATGTATACTGCATCACTTTATGCAGCATTTGCATCTCTCCTTCACAATAAGCACAGCTCACTTGCAGGGAATCGGGTGGTTATGTTCTCATATGGAAGTGGTTTAACAGCTACGATGTTCTCCTTCCGACTTCAAGAATGTCAACATCCGTTTAGCTTGTCAAATATAGTAGCAGTGATGAATGTTTCTGGCAAATTGAAGCAGAGGTTTGAGGTTCTTCCAGAAAAATTTGTCGAAACCTTGAAGGTCATGGAGCATCGTTATGGGGCGAAGGACTTTGTGACAAGCAAGGACTGTAGTCTCTTGCCTCCAGGCACCTACTATCTCACTGAAGTGGATTCGATGTACCGACGATTTTACGCCAGAAAATCTGACACCACCAAAACAGCACATGGTGCTCTCAAATCTGAGAATAATTTGCATGCTAATGGTAACTG 1424 0.4136 MASHPKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTVVASLLEKFKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEENGNTDIEGVDSTNACYGGTAALFNCANWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKFRASHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKRFCEKFEKLEGRLFSIADSDYFVFHSPYNKLVQKSFGRLYFNDFLTKPSFVDEIARGTLSPFASLSSDESYQSRDLEKASQQASKHTYDVKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHSSLAGNRVVMFSYGSGLTATMFSFRLQECQHPFSLSNIVAVMNVSGKLKQRFEVLPEKFVETLKVMEHRYGAKDFVTSKDCSLLPPGTYYLTEVDSMYRRFYARKSDTTKTAHGALKSENNLHANGN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01091 474 SUPERFAMILY Thiolase-like 178 451 IPR016039 GO:0016746
Bva04g01091 474 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 5 177 IPR013528 -
Bva04g01091 474 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 5 452 IPR010122 GO:0004421|GO:0008299
Bva04g01091 474 Gene3D - 2 453 IPR016039 GO:0016746
Bva04g01091 474 SUPERFAMILY Thiolase-like 7 175 IPR016039 GO:0016746
Bva04g01091 474 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 178 452 IPR013746 GO:0004421|GO:0006084|GO:0010142
Bva04g01091 474 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 4 452 - -
Bva04g01091 474 CDD init_cond_enzymes 7 371 - -
Bva04g01091 474 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 108 123 IPR000590 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01091 Bva-Chr4 7247840 7253663 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01091 K01641 - gmx:100794889 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01091 04 7247840 7253663 Bva04g01091 04 7247840 7253663 ECH