Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01759 ATGGCAAAGAATGTTGGGATTCTCGCCATTGACATCTACTTCCCTCCCGCATGCGCTCAGCAGGCAGCATTGGAGACTCATGATGGTGTCAGTAAAGGGAAGTATACCATTGGACTTGGACAAGATTGCATGTCATTCTGTACCGAAGTTGAAGATGTTATCTCAATGAGTTTGACTGTGGTTACTTCCCTTCTTGAGAAGTATGAGATTGATCCTAAACAAATTGGTCGTCTGGAAGTTGGAAGCGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTAATGCAAATCTTTGAGAAATATGGAAACACTGACATTGAGGGTGTTGATTCAACTAACGCATGCTATGGAGGAACTGCTGCTCTGTTCAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGCTTATGATTTTTACAAGCCTAATCTTGCTAGTGAATATCCAGTTGTCGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTATAAGCATTTGTGCCATAAGTATGAGAAATTTGAGGGAAAACAATTTTCTCTTTCTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGCTCGGTTGTTTTTTGATGATTTCTTGAGGAATGCCAGCTCTGTGGATGAGGTTGCCAGAGAAAAGCTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCGAAGCCTCTATATGATGAGAAGGTACAACCAACTACTTTGATTCCAAAACAAGTTGGCAACATGTACACTGCGTCTCTCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCACATTGGCAGGTAATAGGGTGATATTATTCTCATATGGTAGTGGCTTAACTGCCACAATGTTTTCTTTGCGATTTCAAGACGGTGAAGGCCCATTTAGCTTGTCAAACATTGCTAGAGTGATGAATGTTGATGGAAAATTGAAATCAAGACACGAGGTTCATCCGGAGGAGTTTATTGAAACCCTGAAGCTAATGGAGCATAGGTATGGTGCGAAGGAGTTTGTGACAAGCAAGAACGATAGCCTTTTATCTCCTGGCACATTCTATCTCACAGAAGTTGACTCCATGTATCGGAGGTTCTATGCAACGAAAGCTAGAGAAAGCAGTTTGACTTCCGCTGTGAACGGTTTGGTCGCTAATGGCCACTGA 1404 0.4245 MAKNVGILAIDIYFPPACAQQAALETHDGVSKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCHKYEKFEGKQFSLSDAEYFVFHSPYNKLVQKSFARLFFDDFLRNASSVDEVAREKLGPFATLSGDESYQSRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGNRVILFSYGSGLTATMFSLRFQDGEGPFSLSNIARVMNVDGKLKSRHEVHPEEFIETLKLMEHRYGAKEFVTSKNDSLLSPGTFYLTEVDSMYRRFYATKARESSLTSAVNGLVANGH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01759 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Cca06g01759 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Cca06g01759 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Cca06g01759 467 CDD init_cond_enzymes 4 368 - -
Cca06g01759 467 Gene3D - 1 451 IPR016039 GO:0016746
Cca06g01759 467 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Cca06g01759 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Cca06g01759 467 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Cca06g01759 467 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01759 Cca-Chr6 32875043 32882373 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01759 K01641 - gmx:100782595 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01759 06 32875043 32882373 Cca06g01759 06 32875043 32882373 ECH
Cca11g01693 11 41258886 41264059 Cca06g01759 06 32875043 32882373 PCT