Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00516 ATGTCGTTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCGCTTCTTGAGAAGTACGGGATTGATGCTAAACAAATTGGTCGCCTCGAAGTTGGAAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAAACATTCCTTATGCAGATCTTTGAGAAATGCGGAAATACTGACATTGAGGGTGTTGATTCATCTAATGCATGCTATGGGGGAACTGCTGCTCTGTTTAACTGTGTCAATTGGGTGGAGAGTAATTCTTGGGATGGACGCTATGGACTTGTTGTTTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCACGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATATAGAGGAAGTCATATGTCTCATGTTTATGATTTTTACAAGCCTAATCTGGCTAGTGAATATCCAGTTGTTGATGGAAAACTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTATAAGAGTTTCTGTCACAAGTATGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCTGCATACTTTGTTTTTCACTCTCCTTACAACAAGCTTGTGCAGAAGAGTTTTGCGCGGCTGTATTTCAATGACTTTTTGAGGAATGCCAGCTCTGTGGATGAGATTGCCAAAGAAAAGCTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCAAGCCAGCAAGTTGCGAAGGCTCTATATGACGAGAAGGTACAGCCAACAACTTTGATTCCAAAGCAAGTCGGCAACATGTACACTGCGTCTCTCTATGCAGCATTCGCATCCCTTATTCACAACAAACATAGCACATTGGCTGGTGAGAGGGTGATATTATTCTCATATGGAAGTGGCTTAACTTCCACAATTTTTTCTTTGCAATTGCGAGACATTCAACATCCATTTAGCTTGTCAAACATCGCTAGAGTGATGGATATCGATGGAAAATTGAAGTCAAGACACGAGTTTCCACCGGAGGAGTTTGTTGAAAACCTGAAGCTAATGGAGCATAGGTATGGTGCGAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTCTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATAGGAGATTCTATTCAGAGAAAACTAAAGAAAGCAGTTCTATTCCCGCTGTGAACGGTGTGGCTGTGAACGGTGTGATTTCTAATGGCCATTAA 1290 0.4209 MSFCTEVEDVISMSLTVVTSLLEKYGIDAKQIGRLEVGSETVIDKSKSIKTFLMQIFEKCGNTDIEGVDSSNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKYRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKSFCHKYEKFEGKQFSLSDAAYFVFHSPYNKLVQKSFARLYFNDFLRNASSVDEIAKEKLGPFATLSGDESYQSRDLEKASQQVAKALYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGERVILFSYGSGLTSTIFSLQLRDIQHPFSLSNIARVMDIDGKLKSRHEFPPEEFVENLKLMEHRYGAKEFVTSKDSSLLSPGTFYLTEVDSMYRRFYSEKTKESSSIPAVNGVAVNGVISNGH* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00516 429 SUPERFAMILY Thiolase-like 133 404 IPR016039 GO:0016746
Phac2g00516 429 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 1 131 IPR013528 -
Phac2g00516 429 Gene3D - 1 408 IPR016039 GO:0016746
Phac2g00516 429 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 132 406 IPR013746 GO:0004421|GO:0006084|GO:0010142
Phac2g00516 429 NCBIfam hydroxymethylglutaryl-CoA synthase 1 406 IPR010122 GO:0004421|GO:0008299
Phac2g00516 429 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 62 77 IPR000590 GO:0004421|GO:0008299
Phac2g00516 429 CDD init_cond_enzymes 1 325 - -
Phac2g00516 429 SUPERFAMILY Thiolase-like 2 129 IPR016039 GO:0016746
Phac2g00516 429 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 404 - -
Phac2g00516 429 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00516 Phac-Chr2 2586388 2591918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00516 K01641 - gmx:100782595 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g00516 2 2586388 2591918 Phac2g00516 2 2586388 2591918 ECH