Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02492 ATGGCAAAGAACGTCGGGATTCTCGCCATTGACATCTACTTTCCTCCAGCCTGCGTTCAGCAGGAAGCATTGGAGACTCATGATGGTGCCAGCAAAGGGAAGTACACCATTGGGCTTGGCCAAGATTGCATGTCGTTCTGTACCGAAGTGGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGAATTGATGCTAAACAAATTGGTCGCCTCGAAGTTGGAAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAAACATTCCTTATGCAGATCTTTGAGAAATGCGGAAATACTGACATTGAGGGTGTTGATTCAACCAATGCATGCTATGGGGGAACTGCCGCCCTGTTTAACTGTGTCAATTGGGTGGAGAGCAACTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAGTTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATATAGAGGAAGTCATATGTCTCATGTTTATGATTTTTACAAGCCGAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTACAAGAGTTACTGTCACAAGTATGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCGGCATACTTTGTTTTTCACTCACCTTACAACAAGCTTGTACAGAAGAGTTTTGCTCGGCTGTATTTCAATGACTTTTTGAGGAATGCCAGCTCTGTGGACGAGAATGCCAAAGAAAAGCTGGGACCTTTTGCAAATTTATCTGGTGATGAGAGTTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCGAAGCCTCTGTATGACGAGAAGGTACAGCCAACAACCTTGATTCCAAAGCAAGTCGGCAACATGTACACTGCGTCACTCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCACATTGGTGAATGCTGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTTCCACAATATTTTCTTTGCAATTGCGAGATATTCAACATCCATTTAGCTTGTCAAACATCGCTAGAGTGATGGATGTCGATGGAAAATTGAAGTCAAGACACGAGTTTCCACCGGAGAAGTTTGTTGAAACCCTGAAGGTAATGGAGCATAGGTATGGTGCTAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTTTATCTCCGGGTACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGATTTTATTCAGAGAAAACTAAAGAAAGCCGTTCTACTCCCGCTGTGAACGGTGTGATTGCTAATGGTGTGATCGCTAATGGCCACTGA 1425 0.4344 MAKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDAKQIGRLEVGSETVIDKSKSIKTFLMQIFEKCGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPISFESKYRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKSYCHKYEKFEGKQFSLSDAAYFVFHSPYNKLVQKSFARLYFNDFLRNASSVDENAKEKLGPFANLSGDESYQSRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLVNAGKRVILFSYGSGLTSTIFSLQLRDIQHPFSLSNIARVMDVDGKLKSRHEFPPEKFVETLKVMEHRYGAKEFVTSKDSSLLSPGTFYLTEVDSMYRRFYSEKTKESRSTPAVNGVIANGVIANGH 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02492 474 CDD init_cond_enzymes 4 370 - -
Vimu7g02492 474 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Vimu7g02492 474 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 452 - -
Vimu7g02492 474 Gene3D - 1 453 IPR016039 GO:0016746
Vimu7g02492 474 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Vimu7g02492 474 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 451 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vimu7g02492 474 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Vimu7g02492 474 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Vimu7g02492 474 NCBIfam hydroxymethylglutaryl-CoA synthase 2 451 IPR010122 GO:0004421|GO:0008299
Vimu7g02492 474 SUPERFAMILY Thiolase-like 176 449 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02492 Vimu-Chr7 21278298 21283122 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02492 K01641 - gmx:100782595 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02492 7 21278298 21283122 Vimu7g02492 7 21278298 21283122 ECH
Vimu7g02492 7 21278298 21283122 Vimu7g02492 7 21278298 21283122 PCT