Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0749 ATGAAAACAAGGTTAGCTCAACATCCAAGTTTGAGCAGGTGTCAACTATCAATCACAGATAAAATTGGACGGCTGGAAGTTGGCAGTGAAACTGTGATAGACAAAAGCAAGTCCATTAAGACCTTCCTAATGCAAATTTTTGAGGAATCTGGTAATACTGACATTGAAGGAGTGGATTCAACAAATGCATGCTATGGTGGGACTGCAGCTTTATTCAATTGTATAAATTGGGTGGAGAGTAGTTCATGGGATGGGCGTCATGGACTTGTTGTGTGCACCAACAATGCTGTCTATGCAGAAGGTCCAGCCCGACCAACTGGAGGAGCAGCTGCCATTGCCATGCTGGTAGGACCTGGTGCACCTATTGCTTTTGAAAGCAAATTTAAAGGCAGTCATATGTCTCATGCCTAG 411 0.438 MKTRLAQHPSLSRCQLSITDKIGRLEVGSETVIDKSKSIKTFLMQIFEESGNTDIEGVDSTNACYGGTAALFNCINWVESSSWDGRHGLVVCTNNAVYAEGPARPTGGAAAIAMLVGPGAPIAFESKFKGSHMSHA* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0749 136 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 52 67 IPR000590 GO:0004421|GO:0008299
Vvi16g0749 136 SUPERFAMILY Thiolase-like 20 119 IPR016039 GO:0016746
Vvi16g0749 136 FunFam - 6 136 - -
Vvi16g0749 136 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 15 121 IPR013528 -
Vvi16g0749 136 Gene3D - 11 136 IPR016039 GO:0016746
Vvi16g0749 136 CDD init_cond_enzymes 20 124 - -
Vvi16g0749 136 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 20 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0749 Vvi-Chr16 15214117 15221974 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0749 K01641 - vvi:100257525 235.728