Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g0739 . . . . . . Aed1g2212 . . . . . . . . . . . . . . . . . . . Bva03g01472 . . . Cca02g02304 . . . . . . . . . Gma10g02276 . . . Gso10g2145 . . . . . . . . Lal13g0027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu7g0726 . . . . . . . . . . . . . . . . . . . Vra8g2286 .
Vvi16g0740 . . . . . . . . . Aev09g2279 Ahy15g3440 Ahy19g3517 Aip05g03744 Aip09g03973 . . . Amo19g4478 . . . Arst9g03187 . . . . . . . . . . . . Dod02g3121 Dod06g0725 . . . . Gma20g01440 . . . Gso20g1236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste4g01772 . . . Pte9g00281 . . . Pvu7g0671 . . . . . Spst10g01033 . . Sto10g2512 . . . . . . . . . . . . . . . . . . .
Vvi16g0741 . . . . . Adu09g02411 Aed1g2213 . . Aev09g2278 . . . Aip09g03974 . . . Amo19g4477 . . . Arst9g03185 . . . . . Bva04g01088 . . Cca02g02303 . . . . Dod06g0726 . . . . Gma10g02275 . . . Gso10g2144 . . . . . . . . . . . . . . . . Lapu7g02086 . Lasa6g04169 . . . . . . . . . Lja5g0602 Mal1g1968 . . Mepo4g04296 . Mesa1g04714 . . Mtr1g3807 . . . . Phco6g02533 . . Psa6g4607 . . Pste4g01775 . . . . . Pumo3g00882 . Pvu7g0672 . Rops6g02813 . Seca8g07454 . Spst10g01032 Ssu7g0727 . . Sto8g3557 Tpr1g0694 . . Trre1g05477 Tsu01g04483 . . Vian3g00588 . . . Vimu3g03116 . Viun7g03330 . Vivi1g04302 Vra8g2285 .
Vvi16g0742 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0743 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal9g0774 . . . . . . . . . . . . . . . . . . . . . Lja2g2426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0744 . . . . . . . . . . . . . . . . . . . . Arst5g02681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal9g0776 . . . . . . . . . . . . . . . . . . . . . Lja2g2428 . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu4g0799 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0746 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g0747 . . . . . . . Aed7g0510 . Aev09g2277 Ahy15g3441 . Aip05g03745 Aip09g03975 . . . Amo19g4476 . Apr6g0771 . . . . . . Bva03g01469 Bva04g01089 . . . Cca08g00564 . . Dod02g3120 Dod06g0727 . . . . Gma10g02274 . . . Gso10g2143 . . . . Lal2g0889 . . . . . . . . . . . . . . . . . . . . . . Lja2g2469 Lja5g0603 Mal1g1969 . . . . . . . Mtr1g3806 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto10g2514 Sto8g3558 Tpr1g0695 . . . Tsu01g04482 . . . . . . . . . . . . Vra1g0936
Vvi16g0748 . . . . . Adu09g02409 . . . Aev09g2276 . . . Aip09g03976 . . . Amo19g4475 . . . Arst9g03183 . . . . Bva03g01468 Bva04g01090 . . . . . . . Dod06g0728 . . . . Gma10g02273 . . . Gso10g2142 . . . . . . . Lal12g0029 . . . . . . . . Lapu7g02084 . Lasa6g04167 . . . . . . . . . Lja5g0604 Mal1g1979 . . Mepo4g04294 . Mesa1g04712 . . Mtr1g3805 . . . . Phco6g02531 . . . . . Pste4g01788 . . Pte18g00401 . . Pumo3g00884 . Pvu7g0674 . Rops6g02811 . Seca8g07452 . Spst10g01029 . . . . Tpr1g0696 . . Trre1g05475 Tsu01g04481 . . Vian3g00590 . . . Vimu3g03114 . Viun7g03328 . Vivi1g04304 . .
   
Previous Page 2284 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Lja Lja2g2426 Chr2 30236888 30238825 +
Vvi Vvi16g0739 Chr16 14995924 14998494 -
Aed Aed1g2212 Chr1 18450122 18454025 -
Bva Bva03g01472 Chr03 13987432 13998319 +
Cca Cca02g02304 Chr02 43695737 43717742 +
Gma Gma10g02276 Chr10 50338069 50347034 +
Gso Gso10g2145 Chr10 48469582 48479535 +
Lal Lal13g0027 Chr13 168791 173246 -
Ssu Ssu7g0726 Chr7 14637967 14673544 -
Vra Vra8g2286 Chr8 41119772 41129144 +
Vvi Vvi16g0740 Chr16 15032663 15032857 -
Aev Aev09g2279 Chr09 25320357 25325688 +
Ahy Ahy15g3440 Chr15 156967835 156977435 -
Ahy Ahy19g3517 Chr19 157884272 157888946 -
Aip Aip05g03744 Chr05 145534371 145547486 -
Aip Aip09g03973 Chr09 146166233 146171036 -
Amo Amo19g4478 Chr19 161811577 161815962 +
Arst Arst9g03187 Chr9 109386069 109390648 +
Dod Dod02g3121 Chr02 65997629 66004434 +
Dod Dod06g0725 Chr06 8758529 8770189 -
Gma Gma20g01440 Chr20 41551417 41564033 -
Gso Gso20g1236 Chr20 42370749 42384391 -
Pste Pste4g01772 Chr4 13265141 13266079 -
Pte Pte9g00281 Chr9 3137594 3144746 -
Pvu Pvu7g0671 Chr7 5847170 5851242 -
Spst Spst10g01033 Chr10 11006037 11006965 +
Sto Sto10g2512 Chr10 35387729 35397560 -
Vvi Vvi16g0741 Chr16 15048342 15049427 +
Adu Adu09g02411 Chr09 111486398 111488290 -
Aed Aed1g2213 Chr1 18457093 18459163 +
Aev Aev09g2278 Chr09 25315569 25317191 -
Aip Aip09g03974 Chr09 146171436 146173331 +
Amo Amo19g4477 Chr19 161808824 161810751 -
Arst Arst9g03185 Chr9 109383567 109385471 -
Bva Bva04g01088 Chr04 7238232 7240369 +
Cca Cca02g02303 Chr02 43689136 43692870 -
Dod Dod06g0726 Chr06 8785732 8787907 +
Gma Gma10g02275 Chr10 50333655 50335601 -
Gso Gso10g2144 Chr10 48466006 48468043 -
Lapu Lapu7g02086 Chr7 37135880 37137342 -
Lasa Lasa6g04169 Chr6 622163856 622165432 -
Lja Lja5g0602 Chr5 5395736 5397640 +
Mal Mal1g1968 Chr1 25878915 25880576 +
Mepo Mepo4g04296 Chr4 52722946 52724789 -
Mesa Mesa1g04714 Chr1 73246723 73249304 -
Mtr Mtr1g3807 Chr1 49620206 49622330 -
Phco Phco6g02533 Chr6 46827174 46828627 -
Psa Psa6g4607 Chr6 401508005 401509645 +
Pste Pste4g01775 Chr4 13288882 13290612 +
Pumo Pumo3g00882 Chr3 13748886 13750808 +
Pvu Pvu7g0672 Chr7 5856386 5858270 +
Rops Rops6g02813 Chr6 50441536 50443519 -
Seca Seca8g07454 Chr8 171580460 171583108 -
Spst Spst10g01032 Chr10 11002765 11004166 -
Ssu Ssu7g0727 Chr7 14679305 14680758 +
Sto Sto8g3557 Chr8 32716552 32718389 +
Tpr Tpr1g0694 Chr1 5893187 5896005 +
Trre Trre1g05477 Chr1 60284078 60285679 -
Tsu Tsu01g04483 Chr01 52487872 52489538 -
Vian Vian3g00588 Chr3 5881512 5882955 +
Vimu Vimu3g03116 Chr3 44900234 44901697 -
Viun Viun7g03330 Chr7 35255504 35259875 -
Vivi Vivi1g04302 Chr1 91647523 91649469 +
Vra Vra8g2285 Chr8 41108535 41113631 -
Vvi Vvi16g0742 Chr16 15057516 15060277 -
Vvi Vvi16g0743 Chr16 15079753 15080406 -
Lal Lal9g0774 Chr9 5452723 5453805 +
Lja Lja2g2426 Chr2 30236888 30238825 +
Vvi Vvi16g0744 Chr16 15147984 15148636 -
Arst Arst5g02681 Chr5 81302884 81304203 -
Lal Lal9g0776 Chr9 5501808 5503854 +
Lja Lja2g2428 Chr2 30281864 30283586 -
Pvu Pvu4g0799 Chr4 12115108 12115955 +
Vvi Vvi16g0745 Chr16 15161779 15166127 -
Vvi Vvi16g0746 Chr16 15196653 15199312 -
Vvi Vvi16g0747 Chr16 15204367 15205528 -
Aed Aed7g0510 Chr7 3713324 3715572 -
Aev Aev09g2277 Chr09 25313755 25315220 +
Ahy Ahy15g3441 Chr15 156995080 157000974 -
Aip Aip05g03745 Chr05 145556012 145560070 -
Aip Aip09g03975 Chr09 146173331 146174809 -
Amo Amo19g4476 Chr19 161807417 161808814 +
Apr Apr6g0771 Chr6 12020095 12022262 +
Bva Bva03g01469 Chr03 13928291 13928605 +
Bva Bva04g01089 Chr04 7240691 7244366 -
Cca Cca08g00564 Chr08 9410523 9413276 -
Dod Dod02g3120 Chr02 65984448 65987217 +
Dod Dod06g0727 Chr06 8787914 8790332 -
Gma Gma10g02274 Chr10 50332013 50333522 +
Gso Gso10g2143 Chr10 48464311 48465948 +
Lal Lal2g0889 Chr2 5835630 5840846 -
Lja Lja2g2469 Chr2 31243638 31245452 +
Lja Lja5g0603 Chr5 5397796 5399796 -
Mal Mal1g1969 Chr1 25881368 25882382 -
Mtr Mtr1g3806 Chr1 49617721 49619680 +
Sto Sto10g2514 Chr10 35403822 35406172 -
Sto Sto8g3558 Chr8 32721257 32724436 -
Tpr Tpr1g0695 Chr1 5895865 5897857 -
Tsu Tsu01g04482 Chr01 52485298 52487480 +
Vra Vra1g0936 Chr1 10962262 10963961 -
Vvi Vvi16g0748 Chr16 15211547 15212056 -
Adu Adu09g02409 Chr09 111480891 111482474 +
Aev Aev09g2276 Chr09 25310301 25311488 +
Aip Aip09g03976 Chr09 146177642 146179360 -
Amo Amo19g4475 Chr19 161803204 161805083 +
Arst Arst9g03183 Chr9 109378009 109379635 +
Bva Bva03g01468 Chr03 13924527 13926081 +
Bva Bva04g01090 Chr04 7244003 7246271 -
Dod Dod06g0728 Chr06 8794927 8796974 -
Gma Gma10g02273 Chr10 50323744 50325376 +
Gso Gso10g2142 Chr10 48456213 48457683 +
Lal Lal12g0029 Chr12 233182 234904 -
Lapu Lapu7g02084 Chr7 37129337 37130886 +
Lasa Lasa6g04167 Chr6 622014000 622015028 +
Lja Lja5g0604 Chr5 5403373 5404696 +
Mal Mal1g1979 Chr1 25995975 25996988 -
Mepo Mepo4g04294 Chr4 52714650 52716004 +
Mesa Mesa1g04712 Chr1 73235589 73236569 +
Mtr Mtr1g3805 Chr1 49610712 49612319 +
Phco Phco6g02531 Chr6 46819796 46820776 +
Pste Pste4g01788 Chr4 13336418 13337374 -
Pte Pte18g00401 Chr18 9103345 9104742 +
Pumo Pumo3g00884 Chr3 13755694 13756050 -
Pvu Pvu7g0674 Chr7 5863919 5865483 -
Rops Rops6g02811 Chr6 50418100 50434916 +
Seca Seca8g07452 Chr8 171560470 171561972 +
Spst Spst10g01029 Chr10 10994848 10995840 +
Tpr Tpr1g0696 Chr1 5906170 5907730 -
Trre Trre1g05475 Chr1 60270163 60271691 +
Tsu Tsu01g04481 Chr01 52466176 52477907 +
Vian Vian3g00590 Chr3 5892870 5893853 -
Vimu Vimu3g03114 Chr3 44892122 44894112 +
Viun Viun7g03328 Chr7 35250784 35252289 +
Vivi Vivi1g04304 Chr1 91670874 91672493 -