Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00419 ATGGCAGCAGCAACAGCAAAAAATGTTGGAATCCTCGCTATTGACATCTACTTCCCTCCTAATTCTGTTCAACAGGAAGCATTGGAGGCTCATGATGGTGCTAGTAAAGGGAAATATACAATTGGACTTGGACAAGATTGCATGTCATTTTGTTCAGATGTCGAAGATGTCATTTCAATGAGTTTGACAGTGGTTTCTACCCTTCTTGAGAAGTATGGGATCGATCCTAAACAAATTGGTCGTCTTGAAGTAGGCAGTGAGACCGTGATTGACAAAAGCAAATCCATCAAGACATTCTTGATGCAGATCTTTGAGAAACATGGAAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCCGCCTTGTTCAATTGTGTTAACTGGGTGGAGAGCAATTCGTGGGATGGGCGCTATGGACTTGTTGTCTGTACTGACAGTGCAGTTTATGCTGAAGGTCCTGCTCGACCTACCGGAGGAGCTGCTGCTATTGCTATGCTAATTGGTCCTGATGCTCCTATTTCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCCCATGTTTATGATTTTTACAAGCCCGACCTTGCTAGTGAATATCCGGTTGTCGACGGAAAGCTTTCACAAACATGTTACCTCATGGCTCTTGATACTTGCTATAAAAATTTCTGTCAAAAATATGAGAAACACCAGGGAAAACCATTTGCTCTTTCTGATGCTGATTACTTTGTATTCCATTCTCCTTATAACAAGCTTGTGCAAAAAAGTTTTGCTCGTTTGGTCTTCAGTGACTTCTTGAGGAATCCCAGCTCTAAGGATGAGGTTACCAAAGAAAAGCTAGGACCTTTTGCAACTTTATCGGATGACGAGAGCTACCAAAGCCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCTATACGATGAGAAGGTACAACCATCTACTTTGATACCAAAGCAAGTTGGCAACATGTACACCGCATCCATCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCTCACTGGAAGGGAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTGACTTCCACAATGTTTTCCTTGCAACTACGTGAAACTAAACATCCGTTTAGCTTGTCAAACATTGCTCAAGTGATGGATGTTGCTGAAAAGTTGAAGTCAAGACAAGAGTTCCCTCCAGAGAAGTTTATTGAAACACTGAAGCTAATGGAACATAGGTATGGTGCCAAGGATTATGTAACAAGCAAAGACAGTAGCCTTTTGGCTCCAGGCACATTCTATCTCACCGAAGTTGATACCATGTATCGTAGATTCTATGCAACTAAGTCTAGTGAAAGCAATTCGACTCATGCAGTCAACGGTGTGATTACCAATGGTCATTGA 1416 0.4195 MAAATAKNVGILAIDIYFPPNSVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVVSTLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCYKNFCQKYEKHQGKPFALSDADYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTKEKLGPFATLSDDESYQSRDLEKASQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLIHNKHSSLEGKRVILFSYGSGLTSTMFSLQLRETKHPFSLSNIAQVMDVAEKLKSRQEFPPEKFIETLKLMEHRYGAKDYVTSKDSSLLAPGTFYLTEVDTMYRRFYATKSSESNSTHAVNGVITNGH 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00419 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Trre9g00419 471 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Trre9g00419 471 Gene3D - 2 454 IPR016039 GO:0016746
Trre9g00419 471 CDD init_cond_enzymes 8 372 - -
Trre9g00419 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 6 178 IPR013528 -
Trre9g00419 471 SUPERFAMILY Thiolase-like 180 451 IPR016039 GO:0016746
Trre9g00419 471 NCBIfam hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Trre9g00419 471 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Trre9g00419 471 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 4 454 - -
Trre9g00419 471 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 4 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00419 Trre-Chr9 3043492 3047587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00419 K01641 - gmx:100788028 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00419 9 3043492 3047587 Trre9g00419 9 3043492 3047587 ECH