Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3119 ATGGCTTCTTCGCACCGCAAAAACGTGGGAATCCTTGCCATGGACATATACTTCCCTCCCACATACGTGCAGCAGGAAGCTTTGGAGGCTCACGATGGGGTGAGCAAAGGGAAATACACTATTGGGCTGGGGCAAGATTGCTTGGCATTCTGCAGTGAGGTTGAAGATGTTATCTCAATGAGCTTGACGGTTGTTTCCTCACTTCTTCAAAAATATAAAATTGATCCTAAGCAAATTGGACGCATGGAAGTTGGTAGTGAAACTGTCATTGACAAAAGCAAATCGATTAAGACCTTCCTGATGCAAGTTTTTGAGGAGAGTGGTAATACTGACATTGAAGGTGTTGATTCAACAAATGCATGCTATGGTGGAACAGCAGCTTTGTTCAATTGCGTGAATTGGGTGGAGAGTAGTTCATGGGATGGACGCTATGGACTTGTCGTATGTGCAGACAGTGCGGTGTATGCTGAAGGACCTGCACGTCCTACTGGAGGAGCAGCTGCACTTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAATTCAGAGGCAGCCACATGTCTCATGCCTATGATTTTTACAAGCCAAATCTTGCAAGTGAATACCCAGTTGTTGATGGAAAGCTCTCACAGACCTGTTATCTGATGGCACTTGATTCATGCTATAAGGTTTTTTGTGAGAAATTTGAAAAATTGGAAGGGAGGCCTTTCTCAATATCTGATGCTGATTATTTTGCATTTCATTCTCCATATAACAAGCTTGTGCAGAAAAGTTTTGGTCGGCTATACTACAATGACTTCCTGAGAAATCCCAGTTTTGTTGATGAAGCTTCCAGAACAGCCCTAGCACCTTTTGCATCCTTATCTGGTGATGAGAGCTATAAGAGCCGCGATCTTGAAAAGGCAAACCAGCAAGCTGCAAAACGCATATATGACATGAAGGTGCAGCCCAGCACGCTCATCCCAAAGCAAGTTGGTAACATGTACACTGCATCTCTTTATGCGGCATTCGCTTCGGTCCTTCACAATGAGCACAGCTCACTGGTAGGTAGACGCGTAGTTATGTTCTCATATGGAAGTGGTTCAACAGCTACAATGTTCTCATTCCGCATTCGAGAAGGCCAACATCCCTTTAATTTGTCGGACATTGTAACATTGATGGATGTTTCTGGCAAGTTGAAGCAGAGAGTTGAGTTTCCTCCTGAGAAGTTTGACGAAACTATGAAGCTCATGGAGCACCGTTATGGGGCAAGGGACTTTGTGACAAGCAATGACTGTAGCTACCTACTTCCAGGCACCTTTTATCTTACCAAAGTTGATTCTTTGTACCGGAGATTTTACTCAAGGAAGGGCACCACCGGCACACGATAA 1380 0.4449 MASSHRKNVGILAMDIYFPPTYVQQEALEAHDGVSKGKYTIGLGQDCLAFCSEVEDVISMSLTVVSSLLQKYKIDPKQIGRMEVGSETVIDKSKSIKTFLMQVFEESGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCADSAVYAEGPARPTGGAAALAMLVGPDAPIAFESKFRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKVFCEKFEKLEGRPFSISDADYFAFHSPYNKLVQKSFGRLYYNDFLRNPSFVDEASRTALAPFASLSGDESYKSRDLEKANQQAAKRIYDMKVQPSTLIPKQVGNMYTASLYAAFASVLHNEHSSLVGRRVVMFSYGSGSTATMFSFRIREGQHPFNLSDIVTLMDVSGKLKQRVEFPPEKFDETMKLMEHRYGARDFVTSNDCSYLLPGTFYLTKVDSLYRRFYSRKGTTGTR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3119 459 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 7 178 IPR013528 -
Dod02g3119 459 SUPERFAMILY Thiolase-like 179 452 IPR016039 GO:0016746
Dod02g3119 459 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Dod02g3119 459 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Dod02g3119 459 Gene3D - 2 454 IPR016039 GO:0016746
Dod02g3119 459 CDD init_cond_enzymes 8 372 - -
Dod02g3119 459 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 4 453 - -
Dod02g3119 459 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Dod02g3119 459 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3119 Dod-Chr2 65977495 65983471 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3119 K01641 - gmx:100794889 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3119 02 65977495 65983471 Dod02g3119 02 65977495 65983471 ECH