Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02138 ATGGCAAAGAATGTGGGGATTCTCGCTATTGACATTTACTTCCCTCCTACCCGTGTTCAACAGGAAGCATTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACCATTGGACTTGGACAAGATTGCATGTCATTCTGTACCGAGTTTGAAGATGTCATCTCGATGAGTTTGACAGTGGTTACTTCCCTTCTTGAGAAGTATGAGATTGATCCTAAACAAATTGGCCGCCTGGAAGTAGGCAGCGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATATTTGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGAACAGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGGGGAAGTCATATGTCTCATGCTTATGATTTTTACAAACCTGATCTTGCTAGTGAATATCCGGTTGTCGACGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATACTTGCTATAAACATTTCAGTCACAAATTTGAGAAACTGGAGGGAAAACAATTTTCTCTTTCTGACGCTGAGTACTTTGTATTTCACTCTCCTTATAACAAGCTTGTGCAGAAAAGTTTTGCTCGTTTGCTGTTCAGTCACTTCTTGAGGAATCCCAGTTCTCTGGATGAGATTGCCAAAGAAAAGCTGGGACCTTTTGCATCTTTATCCAATGAAGAGAGCTACCAAAGCCGAGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCTATATGATGAGAAGGTACAACCAACTACTTTGATACCAAAGCAAGTTGGCAACATGTACACTGCATCTCTCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCACACTGGCTGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTTCCACGATGTTTTCTTTGCAATTACGTGATTGTCAACATCCATTTAGTTTGTCAAACATTGCTCGAGTGATGGATGTTGCTGCAAAATTGAAGTCAAGACATGAGTTTCCTCCGGAGAAATTTGTGGAAACCCTGAAGCTAATGGAACATAGGTATGGTGGCAAGGATTTTGTGACAAGCAACGACGTTAGCCTTTTATCCCCAGGCACATTCTATCTCACCGAAGTTGATTCCATGTATCGGAGATTCTATGCAAAGAAAACTAGAGAAAGTAGTTTGACTCCTGCAGTCAACGGTTCGATTGCCAATGGTCACTGA 1404 0.4231 MAKNVGILAIDIYFPPTRVQQEALEAHDGASKGKYTIGLGQDCMSFCTEFEDVISMSLTVVTSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHAYDFYKPDLASEYPVVDGKLSQTCYLMALDTCYKHFSHKFEKLEGKQFSLSDAEYFVFHSPYNKLVQKSFARLLFSHFLRNPSSLDEIAKEKLGPFASLSNEESYQSRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLTSTMFSLQLRDCQHPFSLSNIARVMDVAAKLKSRHEFPPEKFVETLKLMEHRYGGKDFVTSNDVSLLSPGTFYLTEVDSMYRRFYAKKTRESSLTPAVNGSIANGH* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02138 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Rops1g02138 467 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Rops1g02138 467 NCBIfam hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Rops1g02138 467 CDD init_cond_enzymes 4 368 - -
Rops1g02138 467 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Rops1g02138 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Rops1g02138 467 Gene3D - 1 451 IPR016039 GO:0016746
Rops1g02138 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Rops1g02138 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Rops1g02138 467 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02138 Rops-Chr1 42650185 42655459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02138 K01641 - gmx:100782595 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02138 1 42650185 42655459 Rops1g02138 1 42650185 42655459 ECH
Rops2g04176 2 76049802 76055321 Rops1g02138 1 42650185 42655459 PCT