Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0317 ATGGCAAAGAACGTCGGGATTCTCGCCATTGACATCTACTTCCCTCCAGCATGCGTTCAGCAGGAAGCATTGGAGACTCATGATGGTGCCAGCAAAGGGAAGTACACCATTGGGCTTGGCCAAGATTGCATGTCGTTCTGTACCGAAGTGGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGAATTGATGCTAAACAAATTGGTCGCCTCGAAGTTGGAAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAAACATTCCTTATGCAGATCTTTGAGAAATGCGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTATGGGGGAACTGCCGCCCTGTTTAACTGTGTCAATTGGGTGGAGAGCAACTCATGGGATGGACGCTACGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAGTTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATATAGAGGAAGTCATATGTCTCATGTTTATGATTTTTACAAGCCGAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTACAAGAGTTTCTGTCACAAGTATGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCGGCATACTTTGTTTTTCACTCACCATACAACAAGCTTGTACAGAAGAGTTTTGCTCGGCTGTATTTTAATGACTTTTTGAGGAATGCCAGCTCTGTGGATGAGAATGCCAAAGAAAAGCTGGGACCTTTTGCAAATTTATCTGGTGATGAGAGTTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCGAAGCCTCTGTATGACGAGAAGGTACAGCCAACAACCTTGATTCCAAAGCAAGTCGGCAACATGTACACTGCGTCACTCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCACATTGGCTGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTTCCACAATATTTTCTTTGCAATTGCGAGATATTCAACATCCATTTAGCTTGTCAAACATCGCTAGAGTGATGGATGTCGATGGAAAATTGAAGTCAAGACACGAGTTTCCACCGGAGAAGTTTGTTGAAACCCTGAAGGTAATGGAGCATAGGTATGGCGCTAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTTTATCTCCGGGCACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGATTTTATTCAGAGAAAACTAAAGAAAGCCGTTCTACTCCCGCCGTGAACGGTGTGATTTCTAATGGTGTGATCGCTAATGGCCACTAA 1419 0.4341 MAKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDAKQIGRLEVGSETVIDKSKSIKTFLMQIFEKCGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPISFESKYRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKSFCHKYEKFEGKQFSLSDAAYFVFHSPYNKLVQKSFARLYFNDFLRNASSVDENAKEKLGPFANLSGDESYQSRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLTSTIFSLQLRDIQHPFSLSNIARVMDVDGKLKSRHEFPPEKFVETLKVMEHRYGAKEFVTSKDSSLLSPGTFYLTEVDSMYRRFYSEKTKESRSTPAVNGVISNGVIANGH* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0317 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vra11g0317 472 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Vra11g0317 472 Gene3D - 1 451 IPR016039 GO:0016746
Vra11g0317 472 CDD init_cond_enzymes 4 368 - -
Vra11g0317 472 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Vra11g0317 472 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Vra11g0317 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Vra11g0317 472 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Vra11g0317 472 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0317 Vra-Chr11 2284430 2289601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0317 K01641 - gmx:100782595 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0317 11 2284430 2289601 Vra11g0317 11 2284430 2289601 ECH
Vra7g1461 7 31893503 31898558 Vra11g0317 11 2284430 2289601 PCT