Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03746 ATGGCTTCTTCGCACCCAAAAAATGTGGGAATCCTTGCTATGGACATCTACTTTCCTCCCACATGCGTGAAACAGGAAGCTTTGGAGGCTCACGATGGGGCCAGCAAAGGGAAATACACTATTGGGCTTGGACAAGATTGCTTGGCATTCTGCACTGAGGTTGAAGATGTTATCTCTATGAGCTTGACAGCTGTATCCTCGCTTCTTAAAAAGTATAAGATTGATCCGAAACAAATTGGACGCATGGAAGTTGGTAGTGAAACTGTCATTGACAAAAGCAAATCCATTAAGACCTTCCTGATGCAACTCTTTGAGGAGAGTGGTAATACTGACATCGAAGGTGTTGATTCAACAAATGCATGCTATGGTGGAACAGCAGCTCTGTTCAATTGCGTGAATTGGGTGGAGAGTAGTTCATGGGATGGTCGCTATGGACTTGTCATATGTGCAGATAATGTGGTTGTTGATGGAAAACTCTCGCAGAATTGTTATCTCATGGCACTTGATTCTTGCTACAAGGTTTTCTGTGAGAAATTCGAAAAGTTGGAGGGGAAGCCCTTTTCAATGGCAGAGGCTGATTACTTTGTGTTTCATTCTCCATATAACAAGCTTGTCCAAAAAAGCTTTGGTCGGCTGTACTACGATGACTTCCTGAGAAATCCCAGTTTTGTTGATGAAGCTGCCAGAACATCCTTGGAACCTTATAAATCACTATCGGGTGACGAAAGCTACAATAGTCGTGATCTTGAAAAGGCAAACCAGCAAGCCTCGAAAAAGATATATGACACGAAGGTGCAGCCCAGCACGTTAATACCGAAAGAAGTTGGTAACATGTACACTGCATCTCTTTATGCAGCATTTGCATCACTCCTTCACAATGAGAACAGCTCACTGATTGGTAAACGTGTAGTTATGTTCTCATATGGAAGTGGTTTAACGGCTACAATGTTCTCCTTCAAGATTCAAGAAGGTCAAGGCCCCTTTACTTTGTCCAACATTGTAACATTGATGGATGTGGCTGGCAAGTTGAAGCAGAGAGTTGAGTTTCCTCCTGAAAAATTTGTTGAAACAATGAAGCTGATGGAACACCGATATGGGGCAAAGGACTATGTGACAAGCGGTGACTGTAGCAACTTACCTGCAGGCACCTTCTATCTTACCAAAGTTGATTCCATGTACCGGAGATTTTATGCCAGAAAGGACACTACCAGCACATGA 1218 0.4302 MASSHPKNVGILAMDIYFPPTCVKQEALEAHDGASKGKYTIGLGQDCLAFCTEVEDVISMSLTAVSSLLKKYKIDPKQIGRMEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVICADNVVVDGKLSQNCYLMALDSCYKVFCEKFEKLEGKPFSMAEADYFVFHSPYNKLVQKSFGRLYYDDFLRNPSFVDEAARTSLEPYKSLSGDESYNSRDLEKANQQASKKIYDTKVQPSTLIPKEVGNMYTASLYAAFASLLHNENSSLIGKRVVMFSYGSGLTATMFSFKIQEGQGPFTLSNIVTLMDVAGKLKQRVEFPPEKFVETMKLMEHRYGAKDYVTSGDCSNLPAGTFYLTKVDSMYRRFYARKDTTST 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03746 405 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 153 400 IPR013746 GO:0004421|GO:0006084|GO:0010142
Aip05g03746 405 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 151 - -
Aip05g03746 405 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 154 400 - -
Aip05g03746 405 Gene3D - 154 402 IPR016039 GO:0016746
Aip05g03746 405 SUPERFAMILY Thiolase-like 8 155 IPR016039 GO:0016746
Aip05g03746 405 Gene3D - 2 153 IPR016039 GO:0016746
Aip05g03746 405 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 154 400 IPR010122 GO:0004421|GO:0008299
Aip05g03746 405 CDD init_cond_enzymes 8 319 - -
Aip05g03746 405 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Aip05g03746 405 SUPERFAMILY Thiolase-like 153 399 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03746 Aip-Chr5 145560987 145565305 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03746 K01641 - gmx:100794889 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03746 05 145560987 145565305 Aip05g03746 05 145560987 145565305 ECH