Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01253 ATGGCAAAGAATGTGGGGATTCTCGCCATCGACATCTACTTCCCTCCTACCTGTATTCAACAGGAAGTGCTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACTATTGGACTTGGTCAAGATTGCATGGCGTTTTGTACAGAAGTAGAAGATGTCATTTCTATGAGGATTTTGTTGCTGAGGACTAACACTGGCATTTTCAGTTTGACAGTAGTTTCTTCCCTTGTAGAGAAGTATGGGATAGATCCTAAAAAAATTGGTCGGCTGGAAGTAGGTAGTGAGACTGTGATTGACAAAAGCAAATCCATCAAAACTTTCCTGATGCAGATCTTTGAGAAATGTGGAAATACGGATATCGAGGGTGTTGATTCAACAAATGCATGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAGCTCATGGGATGGGCGCTATGGGCTTGTTGTCTGCACAGACAGTGCTGTATATGCCGAAGGACCTGCTCGGCCTACTGGTGGAGCTGCCGCTGTTGCCATGCTAATTGGTCCTGATGCTCCCATTGCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGCCTATGACTTTTACAAGCCTAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATTCTTGCTATAATATCTTAAGTCACAAATATGAGAAACTAGAGGGAAAACAATTTTCTATTTCTGATGCTGAATACTTTGTATTTCACTCTCCGTATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGATTTCTTGAAAAATTCCAGTTCTGTGGATAAGGATGCCAAAGAAAAGCTGGAACCTTTTGCAACATTATCTGGTGATGAGAGCTATCAAAGCCGGGATCTAGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCAATTCCATGCAAAGGTGCAACCAACCACCTTGATACCAAAACAAGTTGGCAACATGTACACAGCATCACTTTATGCAGCATTTGTTTCACTTATTCACAACAAACATAGCACATTGGATGGTAAGAGAGTAGTATTGTTCTCCTATGGAAGTGGCTTAACTTCCACAATGTTCTCCTTGCAACTGCGTGAAGGTCAACCTCCATTTAGCTTGTCAAACATTGTGAAAGTGATGGATGTTGATGGAAAATTGAAGTCAAGGCATGAGTTTCCGCCAGAGAAATTTGTTGAAACTATGAAGCTAATGGAACATAGGTATGGTGCCAAGGAGTTTGTAACAAGCAAGGACATCAGCCTTTTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATAGGAGATTCTATGCAAAGAAAACTAGTGAAAGTGATTTGATTACTAATGGTCACTGA 1419 0.4137 MAKNVGILAIDIYFPPTCIQQEVLEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMRILLLRTNTGIFSLTVVSSLVEKYGIDPKKIGRLEVGSETVIDKSKSIKTFLMQIFEKCGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNILSHKYEKLEGKQFSISDAEYFVFHSPYNKLVQKSFARLVFNDFLKNSSSVDKDAKEKLEPFATLSGDESYQSRDLEKASQQVAKPQFHAKVQPTTLIPKQVGNMYTASLYAAFVSLIHNKHSTLDGKRVVLFSYGSGLTSTMFSLQLREGQPPFSLSNIVKVMDVDGKLKSRHEFPPEKFVETMKLMEHRYGAKEFVTSKDISLLSPGTFYLTEVDSMYRRFYAKKTSESDLITNGH* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01253 472 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 117 132 IPR000590 GO:0004421|GO:0008299
Lapu3g01253 472 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 463 - -
Lapu3g01253 472 CDD init_cond_enzymes 4 380 - -
Lapu3g01253 472 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 462 - -
Lapu3g01253 472 SUPERFAMILY Thiolase-like 187 459 IPR016039 GO:0016746
Lapu3g01253 472 Gene3D - 1 463 IPR016039 GO:0016746
Lapu3g01253 472 NCBIfam hydroxymethylglutaryl-CoA synthase 2 461 IPR010122 GO:0004421|GO:0008299
Lapu3g01253 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 187 461 IPR013746 GO:0004421|GO:0006084|GO:0010142
Lapu3g01253 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 186 IPR013528 -
Lapu3g01253 472 SUPERFAMILY Thiolase-like 4 184 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01253 Lapu-Chr3 13551137 13555986 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01253 K01641 - gmx:100780554 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01253 3 13551137 13555986 Lapu3g01253 3 13551137 13555986 ECH
Lapu3g01253 3 13551137 13555986 Lapu3g01253 3 13551137 13555986 PCT