Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00399 ATGGCACCAGCTGCAAAGAACGTTGGAATTCTTGCTCTTGACATCTACTTCCCTCCTAACTGCGTTCAACAGGAAGCATTGGAGGCTCATGATGGTGCAAGTAAAGGGAAATATACAATTGGACTTGGACAAGATTGCATGTCATTTTGCTCTGATGTTGAAGATGTCATCTCAATGAGTTTGACAGTGGTTTCTACACTTCTTGAGAAGTATGAGATCGATCCTAAACAGATTGGTCGTCTGGAAGTAGGCAGTGAAACTGTGATTGACAAGAGCAAATCCATCAAGTCATTCTTGATGCAGATCTTTGAGAAATATGGAAATACTGACATTGAAGGTGTTGATTCAACTAATGCTTGCTATGGAGGAACTGCCGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGTTATGGACTTGTTGTCTGTACTGACAGTGCAGTCTATGCTGAAGGCCCTGCTCGACCTACCGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCCGATGCTCCTATTTCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGTTTATGATTTTTACAAACCTGACCTTGCTAGTGAATATCCTGTTGTCGACGGAAAGCTTTCACAAACATGTTACCTCATGGCTCTTGATACTTGCTTTAAAAATTTCTGTCAAAAATATGAGAAACACGAGGGAAAACAATTTTCTCTTTCTGATGCTGACTACTTTGTATTCCACTCTCCTTATAACAAGCTTGTGCAAAAAAGTTTTGCTCGTTTGGTCTTCAGTGACTTCTTGAGGAATCCCAGCTCTAAGGATGAGGTTACCCAAGAAAAGCTTGGACCTTTTACAACTTTGTCTGATGACGAGAGCTACCAAAGCCGGGATCTTGAAAAGGCATCCCAACAAGTTGCAAAGCCTCTATATGATGAGAAGGTACAACCATCTACTTTGATACCAAAGCAAGTTGGTAACATGTACACTGCATCCATCTATGCAGCATTTGCATCCCTTCTTCACAACAAAAATAGCTCACTGGAAGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTGCCACAATGTTTTCCTTGCAATTACGTGAAACTAAACATCCATTTAGTTTGTCAAACATTGCCCGAGTGATGGATGTTGCTGAAAAGTTGAAGTCAAGACATGAGTTTCCTCCACAGAAGTTCATTGAAACACTGAAGCTAATGGAACATAGGTATGGTGCCAAGGATTATGTAACAAGCAAGGACAGTAGCCTTTTGGCTCCAGGCACATTCTATCTCACCGAAGTTGATACCATGTATCGTAGATTCTATACAACGAAATCTAGTGAAAGCAATTTGACTCCTGCAGTCAACGGTTTGTCTGTCAATGGTCACTGA 1413 0.4147 MAPAAKNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVVSTLLEKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDADYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTQEKLGPFTTLSDDESYQSRDLEKASQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGLTATMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHEFPPQKFIETLKLMEHRYGAKDYVTSKDSSLLAPGTFYLTEVDTMYRRFYTTKSSESNLTPAVNGLSVNGH 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00399 470 NCBIfam hydroxymethylglutaryl-CoA synthase 5 451 IPR010122 GO:0004421|GO:0008299
Mepo5g00399 470 SUPERFAMILY Thiolase-like 7 175 IPR016039 GO:0016746
Mepo5g00399 470 SUPERFAMILY Thiolase-like 179 450 IPR016039 GO:0016746
Mepo5g00399 470 Gene3D - 4 454 IPR016039 GO:0016746
Mepo5g00399 470 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 3 453 - -
Mepo5g00399 470 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 178 452 IPR013746 GO:0004421|GO:0006084|GO:0010142
Mepo5g00399 470 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 5 177 IPR013528 -
Mepo5g00399 470 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 108 123 IPR000590 GO:0004421|GO:0008299
Mepo5g00399 470 CDD init_cond_enzymes 7 371 - -
Mepo5g00399 470 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 5 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00399 Mepo-Chr5 3542068 3547249 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00399 K01641 - gmx:100782595 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00399 5 3542068 3547249 Mepo5g00399 5 3542068 3547249 ECH