Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1582 ATGGCAAAGAACGTCGGGATTCTCGCCATTGACATCTATTTCCCTCCAGCATGCGTTCAGCAGGAGGCATTGGAGACTCATGATGGTGCCAGCAAAGGGAAGTACACCATTGGACTTGGCCAAGATTGCATGTCGTTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTAATTCGCTTCTTGAGAAGTATGAGATTGATGCTAAACAAATTGGTCGCCTCGAAGTTGGAAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAAACATTCCTTATGCAGATCTTTGAGAAATGCGGAAATACTGACATTGAGGGTGTTGATTCATCTAATGCATGCTATGGGGGAACTGCTGCTCTGTTTAACTGTGTCAATTGGGTGGAGAGCAATTCTTGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATATAGAGGAAGTCATATGTCTCATGTTTATGACTTTTACAAGCCTAATCTGGCTAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTATAAGAGTTTCTGTCACAAGTATGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCTGCATACTTTGTTTTTCACTCTCCTTACAACAAGCTTGTGCAGAAGAGTTTTGCTCGGCTGTATTTCAATGACTTTTTGAGGAATGCCAGCTCTGTGGATGAGATTGCCAAAGAAAAGCTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCAAGCCAGCAAGTTGCGAAGCCTCTATATGACGAGAAGGTACAGCCAACAACTTTGATTCCAAAGCAAGTCGGCAACATGTACACTGCGTCTCTCTATGCAGCATTCGCATCCCTTATTCACAACAAACATAGCACATTGGCTGGGGAGAGGGTGGTACTATTCTCATACGGAAGTGGCTTAACTTCCACAATTTTTTCTTTGCAATTGCGAGACATTCAACATCCATTTAGCTTGTCAAACATCGCTAGAGTGATGGATATCGATGGAAAATTGAAGTCAAGACACGAGTTTCCACCGGAGGAGTTTGTTGAAACCCTGAAGCTAATGGAGCATAGGTATGGTGCGAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTCTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATAGGAGATTCTATTCAGAGAAAACTAAAGAAAGCAGTTCTATTCCCGCTGTGAACGGTGTGGCTGTGAACGGTGTGATTTCTAATGGCCATTAA 1419 0.4327 MAKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVNSLLEKYEIDAKQIGRLEVGSETVIDKSKSIKTFLMQIFEKCGNTDIEGVDSSNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKYRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKSFCHKYEKFEGKQFSLSDAAYFVFHSPYNKLVQKSFARLYFNDFLRNASSVDEIAKEKLGPFATLSGDESYQSRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGERVVLFSYGSGLTSTIFSLQLRDIQHPFSLSNIARVMDIDGKLKSRHEFPPEEFVETLKLMEHRYGAKEFVTSKDSSLLSPGTFYLTEVDSMYRRFYSEKTKESSSIPAVNGVAVNGVISNGH* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1582 472 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Pvu2g1582 472 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Pvu2g1582 472 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Pvu2g1582 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Pvu2g1582 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Pvu2g1582 472 CDD init_cond_enzymes 4 368 - -
Pvu2g1582 472 Gene3D - 1 451 IPR016039 GO:0016746
Pvu2g1582 472 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 447 - -
Pvu2g1582 472 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1582 Pvu-Chr2 29464990 29470318 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1582 K01641 - gmx:100782595 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1582 2 29464990 29470318 Pvu2g1582 2 29464990 29470318 ECH
Pvu3g2198 3 42851347 42855953 Pvu2g1582 2 29464990 29470318 PCT