Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00310 ATGGCAAAGAACGTCGGAATTCTCGCCATTGACATCTACTTTCCTCCAGCATGCGTTCAGCAGGAAGCATTGGAGACTCACGATGGTGCCAGCAAAGGGAAGTACACCATTGGGCTTGGCCAAGATTGCATGTCGTTCTGTACCGAAGTGGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGAATTGATGCTAAACAAATTGGTCGCCTCGAAGTTGGAAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAAACATTCCTTATGCAGATCTTTGAGAAATGCGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTATGGGGGAACTGCCGCCCTGTTTAACTGTGTCAATTGGGTGGAGAGCAACTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATATAGAGGAAGTCATATGTCTCATGTTTATGATTTTTACAAGCCGAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAGCTGTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTACAAGAGTTTCTGTCACAAGTATGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCGGCATACTTTGTTTTTCACTCACCTTACAACAAGCTAGTACAGAAGAGTTTTGCACGGCTGTATTTCAATGACTTTTTGAGGAATGCCAGCTCTGTGGATGAGAATGCCAAAGAAAAGCTGGGACCTTTTTCAAATTTATCTGGTGATGAGAGTTACCAAAGTCGGGATCTTGAAAAGGCATCTCAGCAAGCTGCGAAGCCTCTGTATGACGAGAAGGTACAGCCAACAACCTTGATTCCAAAGCAAGTCGGCAACATGTACACTGCGTCACTCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCACATTGGCTGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTTCCACAATATTTTCTTTGCAATTGCGAGATATTCAACATCCATTTAGCTTGTCAAACATCGCTAAAGTGATGGATGTCGATGGAAAATTGAAGTCAAGACACGAGTTTCCACCGGAGAAGTTTGTTGAAACCCTGAAGGTAATGGAGCATAGGTATGGTGCTAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTTTATCTCCGGGCACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGATTTTATTCAGAGAAAACTAAAGAAAGCCTTTCTACTCCCGCTGTGAACGGTGTGATTGCTAATGGTGTGATCGCTAATGGCCACTAA 1419 0.4306 MAKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDAKQIGRLEVGSETVIDKSKSIKTFLMQIFEKCGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKYRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKSFCHKYEKFEGKQFSLSDAAYFVFHSPYNKLVQKSFARLYFNDFLRNASSVDENAKEKLGPFSNLSGDESYQSRDLEKASQQAAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLTSTIFSLQLRDIQHPFSLSNIAKVMDVDGKLKSRHEFPPEKFVETLKVMEHRYGAKEFVTSKDSSLLSPGTFYLTEVDSMYRRFYSEKTKESLSTPAVNGVIANGVIANGH 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00310 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vian10g00310 472 CDD init_cond_enzymes 4 368 - -
Vian10g00310 472 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Vian10g00310 472 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Vian10g00310 472 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 447 - -
Vian10g00310 472 NCBIfam hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Vian10g00310 472 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Vian10g00310 472 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Vian10g00310 472 Gene3D - 1 451 IPR016039 GO:0016746
Vian10g00310 472 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00310 Vian-Chr10 2843115 2847917 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00310 K01641 - gmx:100782595 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00310 10 2843115 2847917 Vian10g00310 10 2843115 2847917 ECH
Vian1g01326 1 14372657 14377330 Vian10g00310 10 2843115 2847917 PCT