Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01826 ATGGCTAAGAATGTGGGGATTCTCGCTATAGACATTTACTTCCCTTCCACCTGTGTTCAGCAGGATGCAATGGAGGTTCATGATGGTGCCAGTAAAGGGAAATATACTATTGGACTTGGACAAGATTGCATGGCGTTTTGTACAGATTTAGAAGATGTCATCTCAATGAGTTTGACAGTAGTTACTTCACTTCTTGAGAAGTATGGGATTGATCCTAAACAAATTGGTCGTATGGAAGTAGGCAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTTGAGAAATATGGAAATACTGATATCGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAGCTCATGGGATGGACGCTATGGTCTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGGCCTACTGGTGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTGCTTTTGAAAGCAAATTGAGGGGAAGTCATATGTCTCATGCCTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCGGTTGTTGATGGGAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATAACTGCTATAATAATTTAAGTCACAAATATGAGAAACTCGAGGGAAAACAATTTTCTCTTGCTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTTGAAGAATCCCAGTTTTGTGGATGGGGTTGCCAAAGAAAAGCTGGAACCTTTTGCAAAGTTATCTGGTGATGAGAGCTACCAAAACCGTGATCTAGAAAAGGTATCTCAGCAAGTTGCAAAGCCTCAATATGATGCCAAGGTGCAACCAACCACTTTGGTACCAAAACAAGTTGGCAACATGTACACTGCATCCCTCTATGCAGCATTTATTTCGCTTATTCACAACAAACATAGCACATTGGTGACTGTTCTAAACGCTAGCTAA 1065 0.415 MAKNVGILAIDIYFPSTCVQQDAMEVHDGASKGKYTIGLGQDCMAFCTDLEDVISMSLTVVTSLLEKYGIDPKQIGRMEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDNCYNNLSHKYEKLEGKQFSLADAEYFVFHSPYNKLVQKSFARLVFNDFLKNPSFVDGVAKEKLEPFAKLSGDESYQNRDLEKVSQQVAKPQYDAKVQPTTLVPKQVGNMYTASLYAAFISLIHNKHSTLVTVLNAS. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01826 354 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Seca12g01826 354 Gene3D - 1 350 IPR016039 GO:0016746
Seca12g01826 354 NCBIfam hydroxymethylglutaryl-CoA synthase 2 345 IPR010122 GO:0004421|GO:0008299
Seca12g01826 354 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Seca12g01826 354 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Seca12g01826 354 CDD init_cond_enzymes 4 342 - -
Seca12g01826 354 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 347 - -
Seca12g01826 354 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 345 IPR013746 GO:0004421|GO:0006084|GO:0010142
Seca12g01826 354 SUPERFAMILY Thiolase-like 175 343 IPR016039 GO:0016746
Seca12g01826 354 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01826 Seca-Chr12 20886113 20890958 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01826 K01641 - gmx:100780554 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01826 12 20886113 20890958 Seca12g01826 12 20886113 20890958 ECH
Seca10g00388 10 3413981 3419343 Seca12g01826 12 20886113 20890958 PCT