Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00350 ATGGCAAAGAATGTAGGGATTCTCGCCATTGACATCTACTTCCCTCCAGCATGCGTTCAGCAGGAAGCATTGGAGACTCATGATGGTGCCAGCAAAGGGAAGTACACCATTGGGCTTGGGCAAGATTGCATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATTGGTCGCCTGGAAGTTGGAAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTTATGCAGATCTTTGAGAAATGCGGAAATACTGACATTGAGGGTGTTGATTCAAGTAATGCATGCTATGGAGGAACTGCTGCTCTGTTTAACTGTGTCAATTGGGTTGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTACGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCAATGCTAATTGGTCCTGATGCTCCCATTGCTTTTGAAAGCAAATATAGAGGAAGTCACATGTCTCATGTTTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTATAAGAGTTTCTGTCACAAGTACGAGAAATTCGAGGGAAAACAGTTTTCTCTTTCTGATGCTGCATACCTAGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGCTCGGTTGTATTTCAATGACTTCTTGAGGAATGCCAGCTCCGTGGATGAGATTGCCAAAGAAAAGCTGGGACCTTTTGCAACTTTATCCGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCGAAGCCTCTATACGATGAGAAGGTGCAACCAACAACTTTGATTCCAAAGCAAGTCGGCAACATGTACACTGCATCTCTCTATGCAGCATTTGCATCCCTTATTCATAACAAACATAGCACGTTGGCAGGTAAGAGGGTGATATTGTTCTCATATGGAAGTGGCTTAACTGCCACATTGTTTTCATTGCAATTGCGGGACATTCAACATCCGTTTAGCTTGTCAAACATCGCTAGAGTGATGGATGTCGATGGAAAATTGAAGTCAAGACAGGAGTTTCCACCGGAGAAGTTTGTTGAAACGCTGAAGCTAATGGAGCATAGGTATGGTGCGAAGGAATTTGTGACAAGCAAGGACGATAGCCTTTTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGGTTCTATTCAGAGAAAACTAAAGAAAGCAGTTCGACTCCCGCAGTGAACGGTGTGATTGCTAATGGCCACTGA 1404 0.4352 MAKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKCGNTDIEGVDSSNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKYRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKSFCHKYEKFEGKQFSLSDAAYLVFHSPYNKLVQKSFARLYFNDFLRNASSVDEIAKEKLGPFATLSGDESYQSRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLTATLFSLQLRDIQHPFSLSNIARVMDVDGKLKSRQEFPPEKFVETLKLMEHRYGAKEFVTSKDDSLLSPGTFYLTEVDSMYRRFYSEKTKESSSTPAVNGVIANGH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00350 467 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
Spst2g00350 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Spst2g00350 467 NCBIfam hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Spst2g00350 467 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Spst2g00350 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Spst2g00350 467 CDD init_cond_enzymes 4 368 - -
Spst2g00350 467 Gene3D - 1 451 IPR016039 GO:0016746
Spst2g00350 467 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 450 - -
Spst2g00350 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Spst2g00350 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00350 Spst-Chr2 2740599 2745959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00350 K01641 - gmx:100782595 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00350 2 2740599 2745959 Spst2g00350 2 2740599 2745959 ECH
Spst3g04395 3 95556417 95560826 Spst2g00350 2 2740599 2745959 PCT