Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02268 ATGGCAAAGAATGTCGGGATTCTCGCCATTGACATCTACTTCCCTCCCGCTTGCGTTCAACAGGAAGCATTGGAGACTCATGATGGTGCCAGTAAAGGGAAGTATACCATTGGACTTGGACAGGATTGCATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATTGGTCGTCTGGAAGTTGGAAGCGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTCGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTACGGAGGAACTGCTGCTCTGTTTAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGTTTATGATTTTTACAAGCCTGATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTATAAGAATTTCTGTCACAAGTACGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGCTCGGTTGTTTTTCAATGACTTCTTGAGGAATCCCAGCTCTGTGGACGAGGTTGCCAAAGAAAAGCTGGGACCTTTTGCAACTTTATCTGGCGACGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCTATATGATCAGAAGGTACAACCAACTACTTTGATTCCAAAGCAAGTTGGAAACATGTACACCGCGTCTCTCTATGCAGCATTTGCATCCCTTATTCACAACAAACATAGCTCATTGGCAGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTGCCACAATGTTTTCTTTGCAATTACGAGACAGTCAACGTCCATTTAGCTTGTCAAACATTGCTAGAGTGATGGATGTCGATGGAAAATTGAAGTCAAGACATGAGTTTCCTCCGGAGGAGTTTGTTGAAACCCTGAAGCTAATGGAGCATAGGTATGGTGCGAAGGAATTTGTGACAAGCAAGGATTGTAGCCTTTTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGATTCTATTCAAAGAAAACTAAAGAAAGCAGTTTGACTCCCGCTGTGAACGGTGTGATTGCCAATGGCGTTGCTAATGGCCACTGA 1416 0.4273 MAKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKNFCHKYEKFEGKQFSLSDAEYFVFHSPYNKLVQKSFARLFFNDFLRNPSSVDEVAKEKLGPFATLSGDESYQSRDLEKASQQVAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSSLAGKRVILFSYGSGLTATMFSLQLRDSQRPFSLSNIARVMDVDGKLKSRHEFPPEEFVETLKLMEHRYGAKEFVTSKDCSLLSPGTFYLTEVDSMYRRFYSKKTKESSLTPAVNGVIANGVANGH 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02268 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Pumo8g02268 471 NCBIfam hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Pumo8g02268 471 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Pumo8g02268 471 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Pumo8g02268 471 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 450 - -
Pumo8g02268 471 CDD init_cond_enzymes 4 368 - -
Pumo8g02268 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Pumo8g02268 471 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Pumo8g02268 471 Gene3D - 1 451 IPR016039 GO:0016746
Pumo8g02268 471 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02268 Pumo-Chr8 59838580 59844336 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02268 K01641 - gmx:100782595 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02268 8 59838580 59844336 Pumo8g02268 8 59838580 59844336 ECH
Pumo4g01576 4 19904768 19910179 Pumo8g02268 8 59838580 59844336 PCT