Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00361 ATGGCAGAAAGCGGTGTGAGTGACTTGCACAACTCACTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTATCTATCTTTCTCTGCGATCTTCTGTCTTCGCTTCTATTCCATCAAGAGAGCCTTCATTTTCATTGTTCTCTTTGGAACCGCTGAGCACAAAATGGCAAAGAACGTAGGGATTCTCGCCATTGACATCTATTTCCCTCCAGCATGCGTTCAGCAGGAGGCATTGGAGACTCATGATGGTGCCAGTAAAGGGAAGTACACCATTGGACTTGGCCAAGATTGCATGTCGTTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTAATTCGCTTCTTGAGAAGTATGGGATTGATGCTAAACAAATTGGTCGCCTCGAAGTTGGAAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAAACATTCCTTATGCAGATCTTTGAGAAATGCGGAAATACCGACATTGAGGGTGTTGATTCATCTAATGCATGCTATGGGGGAACTGCTGCTCTGTTTAACTGTGTCAATTGGGTGGAGAGCAATTCTTGGGATGGACGCTATGGACTTGTTGTTTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATATAGAGCAAGTCATATGTCTCATGTTTATGATTTTTACAAGCCTAATCTGGCTAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATTCTTGCTATAAGAGTTTCTGTCACAAGTATGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCTGCATACTTTGTTTTTCACTCTCCTTACAACAAGCTTGTGCAGAAGAGTTTTGCTCGGCTGTATTTCAATGACTTTTTGAGGAATGCCAGCTCTGTGGATGAGATTGCCAAAGAAAAGCTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCAAGCCAGCAAGTTGCGAAGCCTCTATATGACGAGAAGGTACAGCCAACAACTTTGATTCCAAAGCAAGTCGGCAACATGTACACTGCGTCTCTCTATGCAGCATTCGCATCCCTTATTCACAACAAACATAGCACATTGGCTGGTGAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTGCCACAATTTTTTCTTTGCAATTGCGAGACATTCAACATCCATTTAGCTTGTCAAACATCGCTAGAGTGATGGATATCGATGGAAAATTAAAGTCAAGACACGAGTTTCCACCGGAGGAGTTTGTTGAAAACCTGAAGCTAATGGAGCATAGGTATGGTGCGAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTCTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATAGGAGATTCTATTCAGAGAAAACTAAGGAAAGCAGTTCTATTCCCGCTGTGAATGGTGTGGCTGTGAACGGTGTGGCTGTGAACGGAGTGATTTCTAATGGCCACTAA 1593 0.4319 MAESGVSDLHNSLLFLSLSLSLYLSFSAIFCLRFYSIKRAFIFIVLFGTAEHKMAKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVNSLLEKYGIDAKQIGRLEVGSETVIDKSKSIKTFLMQIFEKCGNTDIEGVDSSNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKYRASHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKSFCHKYEKFEGKQFSLSDAAYFVFHSPYNKLVQKSFARLYFNDFLRNASSVDEIAKEKLGPFATLSGDESYQSRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGERVILFSYGSGLTATIFSLQLRDIQHPFSLSNIARVMDIDGKLKSRHEFPPEEFVENLKLMEHRYGAKEFVTSKDSSLLSPGTFYLTEVDSMYRRFYSEKTKESSSIPAVNGVAVNGVAVNGVISNGH 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00361 530 CDD init_cond_enzymes 57 421 - -
Phco4g00361 530 SUPERFAMILY Thiolase-like 57 225 IPR016039 GO:0016746
Phco4g00361 530 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 55 227 IPR013528 -
Phco4g00361 530 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 53 503 - -
Phco4g00361 530 SUPERFAMILY Thiolase-like 229 500 IPR016039 GO:0016746
Phco4g00361 530 NCBIfam hydroxymethylglutaryl-CoA synthase 55 502 IPR010122 GO:0004421|GO:0008299
Phco4g00361 530 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 158 173 IPR000590 GO:0004421|GO:0008299
Phco4g00361 530 Gene3D - 54 504 IPR016039 GO:0016746
Phco4g00361 530 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 54 500 - -
Phco4g00361 530 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 228 502 IPR013746 GO:0004421|GO:0006084|GO:0010142
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00361 Phco-Chr4 2345902 2351410 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00361 4 2345902 2351410 Phco4g00361 4 2345902 2351410 ECH
Phco8g00679 8 6801090 6805638 Phco4g00361 4 2345902 2351410 PCT