Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07838 ATGGCAGCAAAGAACGTTGGAATTCTCGCTCTCGACATCTACTTCCCTCCCAACTGCGTTCAACAGGAAGCATTGGAGGTTCATGATGGTGCGAGTAAAGGGAAATATACGATTGGGCTTGGACAAGATTGTATGTCGTTTTGTTCCGATGTTGAAGATGTTATCTCCATGAGTTTGACGGTGGTTTCTACTCTTCTTGAGAAGTATGAGATCGATCCTAAACAAATTGGTCGTCTGGAAGTAGGCAGTGAGACTGTGATAGACAAAAGCAAATCCATTAAGTCATTCTTGATGCAGATCTTTGAGAAATATGGAAATACAGACATTGAAGGTGTTGATTCGACTAATGCATGCTATGGAGGAACTGCCGCTTTGTTCAATTGTGTCAACTGGGTGGAGAGCAATTCATGGGATGGACGTTATGGACTTGTTGTCTGCACAGACAGTGCTGTCTATGCTGAAGGTCCTGCTCGACCCACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCTATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGGCTCATGTTTATGATTTTTACAAACCTGACCTTGCTAGTGAATATCCGGTTGTCGACGGAAAGCTTTCACAAACATGTTACCTCATGGCTCTTGATACTTGCTATAAAAATTTCTGTCAAAAATATGAGAAACACGAGGGAAAACCATTTTCTCTTTCTGACGCTGGTTATTATGTATTCCACTCTCCTTATAACAAGCTTGTGCAAAAAAGTTTTGCTCGTTTGGTCTTTAGTGATTTCTTGAGGAATGCTAGCTCTTCTACGGATGAGGTTGCCAAAGAAAAGCTGGGACCTTTTGCAGCTTTATCTGATGAGGAGAGCTACCAAAGCCGGGATCTTGAAAAGGCATCCCAACAAGTTGCAAAACCTCTATTTGATGAGAAGGTACAACCAACTACTTTGATCCCAAAGCAAGTCGGCAACATGTACACAGCGTCCCTCTATGCAGCATTTGCATCCCTTATTCACAACAAAAATAGCTCATTGGAAGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTTCCACAATGTTTTCCTTGCAATTACGCGAAGCTAAACATCCATTTAGCTTGTCAAACATTGCCCGAGTGATGGATGTTGCTGAAAAGTTGAAGTCAAGACAAGAGTTTCCTCCAGAGAAGTTTATTGAAACACTGAAGCTAATGGAGCATAGGTATGGTGGCAAAGATTATGTAACAAGCAAGGACAGTAGCCTTTTATATCCAGGCACATTCTATCTCACCGAAGTTGATACCAAGTATCGCAGATTCTATGCGACAAAATCTAGTGAAAGCAATTCGACAGCCAACGGTGTGAGTGCCAATGGTCACTGA 1404 0.4209 MAAKNVGILALDIYFPPNCVQQEALEVHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVVSTLLEKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCYKNFCQKYEKHEGKPFSLSDAGYYVFHSPYNKLVQKSFARLVFSDFLRNASSSTDEVAKEKLGPFAALSDEESYQSRDLEKASQQVAKPLFDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKNSSLEGKRVILFSYGSGLTSTMFSLQLREAKHPFSLSNIARVMDVAEKLKSRQEFPPEKFIETLKLMEHRYGGKDYVTSKDSSLLYPGTFYLTEVDTKYRRFYATKSSESNSTANGVSANGH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07838 467 SUPERFAMILY Thiolase-like 177 449 IPR016039 GO:0016746
Vifa1g07838 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 176 451 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vifa1g07838 467 NCBIfam hydroxymethylglutaryl-CoA synthase 3 451 IPR010122 GO:0004421|GO:0008299
Vifa1g07838 467 SUPERFAMILY Thiolase-like 5 173 IPR016039 GO:0016746
Vifa1g07838 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 452 - -
Vifa1g07838 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 175 IPR013528 -
Vifa1g07838 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 106 121 IPR000590 GO:0004421|GO:0008299
Vifa1g07838 467 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 452 - -
Vifa1g07838 467 CDD init_cond_enzymes 5 370 - -
Vifa1g07838 467 Gene3D - 2 453 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07838 Vifa-Chr1 1224066638 1224070648 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07838 K01641 - gmx:100782595 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07838 1 1224066638 1224070648 Vifa1g07838 1 1224066638 1224070648 ECH