Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01280 TACTTTATTCCAATTGTCTGTCACACTACAGGAGCCACCATGGTTGCAAAATATCAGTTCTATCATATTTCACTAGCATTGCTTTTCTGCATGGGATTCTTGGCTTTTCAAGTCTCATGTCGCACTCTCCAAGATGCCACCATGTATGAAAGGCATGAGGAATGGATGGCTCGTTATGGCAAATGGTATAAGGACCCTCAAGAAAGGGAAAAGCATTTCAGGATATTCAAGGAAAATGTGAATTACATTGAAGCCTTCAACCGTGATGCCAATAAACCTTATAAGTTAGCCATTAATCAATTTGCAGACCTCACCAACGAGGAGTTCATAGCTCCAAGAAATAGATTCAAGGGGCACATGTGTTCCTCAATCATAAGGTCAACCACTTTTAAGTATGAAAATGTGACTGCAGTACCATCCACTGTAGACTGGAGGCAAAAGGGTGCAGTGACACCCGTCAAGGACCAAGGCCAGTGTGGATGCTGCTGGGCTTTCTCTGCTGTTGCAGCAACTGAAGGACTTCACAAACTGAGTACTGGAAAATTGATCTCTTTGTCCGAACAAGAACTTGTTGATTGTGATATAAAGGGGGAGGACCAAGGTTGTGCGGGTGGTCTTATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGACTCAACACCGAAGCCAATTACCCCTATAAGGGTGTTGATGGAAAATGCAATGCAAATGCAGCCAACCATGCTGCTAGCATTACTGGGTACGAGGATGTCCCAGCAAACAATGAGAAGGCACTGCAAAAGGCTGTGGCCAATCAACCAGTTTCTGTTGCCATTGATGCCAGTGGCTCTGACTTTCAATTTTACAAGAGTGGTGTCTTCACCGGTTCATGTGGAACTGAGTTGGACCACGGTGTAACTGCTGTGGGATATGGTGTCAGCGATGATGGAAGTGAGTATTGGCTGGTTAAGAACTCATGGGGAACAGAGTGGGGTGAAGAGGGTTACATTAGGATGCAAAGAGGTGTGGCTGCTCAAGAAGGACTCTGTGGCATAGCTATGATGGCATCTTACCCCACTGCATAA 1068 0.4476 YFIPIVCHTTGATMVAKYQFYHISLALLFCMGFLAFQVSCRTLQDATMYERHEEWMARYGKWYKDPQEREKHFRIFKENVNYIEAFNRDANKPYKLAINQFADLTNEEFIAPRNRFKGHMCSSIIRSTTFKYENVTAVPSTVDWRQKGAVTPVKDQGQCGCCWAFSAVAATEGLHKLSTGKLISLSEQELVDCDIKGEDQGCAGGLMDDAFKFIIQNHGLNTEANYPYKGVDGKCNANAANHAASITGYEDVPANNEKALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSDDGSEYWLVKNSWGTEWGEEGYIRMQRGVAAQEGLCGIAMMASYPTA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01280 355 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Vimu5g01280 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Vimu5g01280 355 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Vimu5g01280 355 SMART Inhibitor_I29_2 52 109 IPR013201 -
Vimu5g01280 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Vimu5g01280 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Vimu5g01280 355 Pfam Cathepsin propeptide inhibitor domain (I29) 52 109 IPR013201 -
Vimu5g01280 355 CDD Peptidase_C1A 139 353 IPR039417 -
Vimu5g01280 355 FunFam Senescence-specific cysteine protease SAG39 33 355 - -
Vimu5g01280 355 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Vimu5g01280 355 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Vimu5g01280 355 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Vimu5g01280 355 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 40 352 IPR013128 GO:0008234
Vimu5g01280 355 SUPERFAMILY Cysteine proteinases 44 354 IPR038765 -
Vimu5g01280 355 Gene3D Cysteine proteinases 35 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01280 Vimu-Chr5 22754764 22755914 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01280 - K16292 gmx:102666929 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01280 5 22754764 22755914 Vimu5g01280 5 22754764 22755914 ECH