Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0854 ATGGCTTCCAAAACTGTACTTAACATCACTTCATTGGCTTTGCTTCTTGTGTTTGGATTCTTGTCTTTTGAGGCCAATGCTCGCACTCTTGAAGATGCTTCAATGCATGAGAGGCATGAGCAATGGATGGCTCAGTATGGAAAAGTCTACAAGGACTCTTATGAGAAAGAGTTGCGGTCCAAGATATTCAAAGAAAACGTTCAACGCATAGAAGCCTTTAACAATGCTGGAAACAAGTCTTACAAGCTAGGCATCAACCAATTTGCTGATCTCACAAATGAGGAATTCAAAGCCAGAAATAGATTCAAGGGTCACATGTGCTCCAATTCTACAAGGACACCAACATTTAAGTATGAACATGTGACATCAGTGCCAGCTTCATTAGATTGGAGGCAGAAAGGAGCTGTCACACCCATTAAGGACCAAGGCCAATGTGGATGTTGCTGGGCATTTTCTGCTGTGGCAGCAACAGAAGGTATCACCAAGCTGAGTACTGGCAAATTGATCTCTTTATCCGAGCAAGAGCTAGTTGATTGTGACACAAAGGGTGTGGACCAAGGTTGTGAAGGGGGTCTAATGGATGATGCCTTCAAATTTATAATGCAAAACAAAGGACTCAACACAGAAGCCAAGTACCCATACCAGGGTGTTGATGCAACATGCAATGCAAATGCAGAAGCCAAAGATGCAGCCAGCATTAAGGGGTTTGAGGATGTCCCTGCCAACAGTGAGAGTGCACTGCTCAAAGCTGTTGCTAATCAACCTATTTCTGTGGCTATTGATGCTAGCGGATCTGAGTTTCAATTTTATTCAAGTGGTGTCTTCACTGGATCATGTGGCACTGAATTGGATCATGGTGTCACTGCTGTTGGGTATGGAAGTGATGGTGGAACCAAATATTGGTTGGTCAAGAATTCATGGGGAGAACAGTGGGGTGAACAAGGATACATTAGGATGCAGAGAGATGTTGCTGCTGAAGAAGGCTTGTGCGGCATTGCAATGCAGGCTTCTTACCCCACTGCATAG 1026 0.4425 MASKTVLNITSLALLLVFGFLSFEANARTLEDASMHERHEQWMAQYGKVYKDSYEKELRSKIFKENVQRIEAFNNAGNKSYKLGINQFADLTNEEFKARNRFKGHMCSNSTRTPTFKYEHVTSVPASLDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGITKLSTGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIMQNKGLNTEAKYPYQGVDATCNANAEAKDAASIKGFEDVPANSESALLKAVANQPISVAIDASGSEFQFYSSGVFTGSCGTELDHGVTAVGYGSDGGTKYWLVKNSWGEQWGEQGYIRMQRDVAAEEGLCGIAMQASYPTA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0854 341 SMART pept_c1 124 340 IPR000668 GO:0006508|GO:0008234
Lja3g0854 341 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Lja3g0854 341 PRINTS Papain cysteine protease (C1) family signature 142 157 IPR000668 GO:0006508|GO:0008234
Lja3g0854 341 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Lja3g0854 341 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 22 340 - -
Lja3g0854 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 142 153 IPR000169 -
Lja3g0854 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Lja3g0854 341 SUPERFAMILY Cysteine proteinases 32 340 IPR038765 -
Lja3g0854 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Lja3g0854 341 SMART Inhibitor_I29_2 39 96 IPR013201 -
Lja3g0854 341 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Lja3g0854 341 Pfam Papain family cysteine protease 124 340 IPR000668 GO:0006508|GO:0008234
Lja3g0854 341 Gene3D Cysteine proteinases 20 341 - -
Lja3g0854 341 CDD Peptidase_C1A 125 339 IPR039417 -
Lja3g0854 341 PANTHER - 22 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0854 Lja-Chr3 8677874 8678995 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0854 - K16292 gmx:100778111 570.081