Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1984 ATGTCCCGAAAGTTTCACGAGCCATCGATGCGAGAAAGGCACGAGCAATGGATGGCAAAATATGGCAAAGTGTATAAGGATGCTGCAGAGAAGGAGAAACGTTTCCTAATATTCAAGGACAATGTGGAGTTCATTGAATCATTCAATGCAGCTGGTAACAAACCTTACAAGCTTGGCCTTAATCACCTAGCTGACCTTACCATTGAGGAATTCAAGGCTTCCCGTAATGGATACAAGAAGTCTCTTGAGTTTAGGACAACATCATTCAAGTATGAAAATGTGACTGCTGTTCCTGCTGCTTTGGACTGGCGGAAAAAAGGAGCTGTTACTCCAATCAAGGACCAAGGCCAGTGTGGTAGCTGCTGGGCTTTTTCAGCAGTGGCTGCAACTGAGGGTATCCACGAAATATCTACAGGCAAACTAGTCTCCCTCTCGGAGCAGGAGATAGTGGATTGTGACACTAAAGGTGTTGATCAAGGGTGTGAAGGAGGTTACATGGAAGATGCATTTGAGTTTATCATTAAAAATGGTGGAATCACCAGTGAGGCAAACTACCCCTACAAAGCAGTTGATGGGACTTGTCACTCAAAGGGAACACCTCCCGTAGCTAAGATTAAGGGGTATGAGAAAGTCCCAGCCAATAGCGAGGACACACTCCTGAAAGCTGTGGCTAACCAACCAGTTTCAGTTTCTATTGATGCTAGTGATGGAAGCTTCATGTTTTACTCTAGTGGAATTTTCACGGGAGAATGTGGAACTCAGCTAGATCATGGTGTTACTGCAGTTGGTTATGGTACTGCTGATGGTACCGACTATTGGCTAGTGAAGAATTCATGGGGCACGGTTTGGGGTGAGAAAGGATACATAAGGATGAAGCGAGGCATTGCTTCCAAGGAAGGTTTATGTGGTATTGCTATGGATGCCTCTTATCCAACTGCTTAA 942 0.449 MSRKFHEPSMRERHEQWMAKYGKVYKDAAEKEKRFLIFKDNVEFIESFNAAGNKPYKLGLNHLADLTIEEFKASRNGYKKSLEFRTTSFKYENVTAVPAALDWRKKGAVTPIKDQGQCGSCWAFSAVAATEGIHEISTGKLVSLSEQEIVDCDTKGVDQGCEGGYMEDAFEFIIKNGGITSEANYPYKAVDGTCHSKGTPPVAKIKGYEKVPANSEDTLLKAVANQPVSVSIDASDGSFMFYSSGIFTGECGTQLDHGVTAVGYGTADGTDYWLVKNSWGTVWGEKGYIRMKRGIASKEGLCGIAMDASYPTA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1984 313 PRINTS Papain cysteine protease (C1) family signature 257 267 IPR000668 GO:0006508|GO:0008234
Dod03g1984 313 PRINTS Papain cysteine protease (C1) family signature 115 130 IPR000668 GO:0006508|GO:0008234
Dod03g1984 313 PRINTS Papain cysteine protease (C1) family signature 272 278 IPR000668 GO:0006508|GO:0008234
Dod03g1984 313 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 5 312 - -
Dod03g1984 313 SMART pept_c1 97 312 IPR000668 GO:0006508|GO:0008234
Dod03g1984 313 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 115 126 IPR000169 -
Dod03g1984 313 PANTHER SENESCENCE-ASSOCIATED GENE 12 5 312 - -
Dod03g1984 313 CDD Peptidase_C1A 98 311 IPR039417 -
Dod03g1984 313 Gene3D Cysteine proteinases 2 313 - -
Dod03g1984 313 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 272 291 IPR025661 -
Dod03g1984 313 SUPERFAMILY Cysteine proteinases 6 312 IPR038765 -
Dod03g1984 313 Pfam Cathepsin propeptide inhibitor domain (I29) 14 71 IPR013201 -
Dod03g1984 313 SMART Inhibitor_I29_2 14 71 IPR013201 -
Dod03g1984 313 Pfam Papain family cysteine protease 97 312 IPR000668 GO:0006508|GO:0008234
Dod03g1984 313 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 255 265 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1984 Dod-Chr3 45101667 45103068 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1984 - - gmx:102664257 557.37