Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1388 ATGCATGAGAGGCATGAACAATGGATGACTCGTTATAGCAGAGTGTACAAGGACCCTGAGGAAAAGGAAAAGCGCTTCAGGATATTCAAGGAAAATGTCAATTACATTGAAGCCTTCAACAATGCTGCCAATAAAGCTTACAACCTAGCCATCAATCAATTTGCAGACCTCACCAACGAGGAGTTCATAGCTCCAAGAAATAGATTCAAGGGGCACGTGTGTTCCTCAATCACAAGAACAACCACTTTTAAGTATGAAAATGTGAGTGCAGTACCATCCACTGTGGACTGGAGGCTAAAGGGTGCAGTGACACCCGTCAAGGACCAAGGCCAGTGTGGATGCTGCTGGGCGTTTTCTGCTGTTGCAGCAACTGAAGGAATTCACAAACTTAGTACTGGAAAATTGATCTCTTTATCTGAACAAGAACTCGTTGATTGTGATATAAAGGGGGTGGACCAAGGTTGTGGTGGTGGTCTTATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGACTCAACACCGAAGCCAGTTACCCCTATAAGGGTGTTGATGGAAAGTGCAATGCAAATGCAGCAGCCAACCATGCTGCTACCATTACTGGGTATGAAGATGTCCCTGTCAACAATGAGAAGGCACTTCAAAAGGCTGTGGCTAATCAACCAGTGTCTGTAGCCATTGATGCCAGTGGGTCTGACTTTCAATTTTACAAGAGTGGTGTCTTCACTGGTTCATGTGGAACAGAGTTGGATCACGGTGTGACTGCTGTGGGATATGGTGTTAGTGATGATGGGAAGTATTGGTTGGTAAAGAACTCATGGGGAACAGAATGGGGTGAAGAAGGCTACATTAGGATGCAAAGAGGTGTAGCTGCTGAGGAAGGACTCTGTGGGATAGCTATGATGGCATCTTATCCTACTGCTTGA 927 0.4488 MHERHEQWMTRYSRVYKDPEEKEKRFRIFKENVNYIEAFNNAANKAYNLAINQFADLTNEEFIAPRNRFKGHVCSSITRTTTFKYENVSAVPSTVDWRLKGAVTPVKDQGQCGCCWAFSAVAATEGIHKLSTGKLISLSEQELVDCDIKGVDQGCGGGLMDDAFKFIIQNHGLNTEASYPYKGVDGKCNANAAANHAATITGYEDVPVNNEKALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSDDGKYWLVKNSWGTEWGEEGYIRMQRGVAAEEGLCGIAMMASYPTA* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1388 308 Pfam Papain family cysteine protease 91 307 IPR000668 GO:0006508|GO:0008234
Pvu11g1388 308 PANTHER - 1 307 - -
Pvu11g1388 308 SUPERFAMILY Cysteine proteinases 3 306 IPR038765 -
Pvu11g1388 308 CDD Peptidase_C1A 92 306 IPR039417 -
Pvu11g1388 308 Gene3D Cysteine proteinases 1 308 - -
Pvu11g1388 308 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 267 286 IPR025661 -
Pvu11g1388 308 Pfam Cathepsin propeptide inhibitor domain (I29) 5 62 IPR013201 -
Pvu11g1388 308 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 250 260 IPR025660 -
Pvu11g1388 308 SMART pept_c1 91 307 IPR000668 GO:0006508|GO:0008234
Pvu11g1388 308 PRINTS Papain cysteine protease (C1) family signature 109 124 IPR000668 GO:0006508|GO:0008234
Pvu11g1388 308 PRINTS Papain cysteine protease (C1) family signature 252 262 IPR000668 GO:0006508|GO:0008234
Pvu11g1388 308 PRINTS Papain cysteine protease (C1) family signature 267 273 IPR000668 GO:0006508|GO:0008234
Pvu11g1388 308 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 109 120 IPR000169 -
Pvu11g1388 308 SMART Inhibitor_I29_2 5 62 IPR013201 -
Pvu11g1388 308 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1388 Pvu-Chr11 30602287 30603293 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1388 - K16292 gmx:102666929 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1388 11 30602287 30603293 Pvu11g1388 11 30602287 30603293 ECH