Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01285 ATGGGCCTGTCATTGGTACATGCTCTGTTCTTAACTCTGTTTCTGTTCTGCCTCAAAACAAAAGCAGAGGACTCTAGTCCAACCAGAAAGCTCGCAGGAGCATGCAATTTGTTCAGAGGGAAATGGGTCTACGATGCTTCCTACCCTCTCTATGATCCTTCTTCTTGTCCCTTCATAGATCCACAGTTCAATTGCCAAAAGCATGGTCGCTCTGATCAACTCTATCAGAAATATAGGTGGACGCCATTTTCTTGTCCCTTGCCAAGGTTCAATGGATTGGACTTTTTGCAGAAATACAGAGGGAAGAAGATTATGTATGTTGGTGACTCCTTGAGCTTGAACCAGTTCAATTCATTGGCATGTATGATTCATGCTTGGGTGCCAAAATCTAGGAGCACTTTCAGTCAAAGGGATGCTCTTTCCAAAGTCACATTTGAGGACTATGGCCTTGAGATATACTTGTACAGAACAGCATATTTAGTGGATCTTGACCGTGAGAAAGTGGGACGAGTTTTGAAACTTGACTCTATCAAGAACGGTGACTCGTGGATGGGGATGGACGTGCTGATCTTCAACACGTGGCACTGGTGGACCCACACCGGAAGCTCACAACCGTGGGACTATGTTGAGGTGGATAATAGGTTGTTGAAAGACATGAACCGTTTTGTTGCATACTATAAAGGGCTAACAACTTGGGCAAAGTGGATTGAAAGAAACGTGAATCCATCAGAAACGAAGGTGTTCTTCTTGGGAATATCTCCGGTGCATTACATGGGAAGAGATTGGAATGAAGCGGGAAAATCATGTATGAGTGAAAGAGAGCCATTCTTTGGAGTGAAGTATCCTGCAGGAACACCAATGGCTTGGGTGGTGGTGAACAAAGTGTTGAAGAGGATAAAAAAGCCTGTGTATTTCTTGGATGTTACCACACTCTCACAGTACAGAAAAGATGCACATCCTGAAGGGTATAGTGGAGTTATGCCAGTAGATTGCAGCCATTGGTGTCTTCCAGGGCTCCCTGACACTTGGAATCAACTTCTCACTGCACTTCTTTCTTCTTGA 1062 0.4435 MGLSLVHALFLTLFLFCLKTKAEDSSPTRKLAGACNLFRGKWVYDASYPLYDPSSCPFIDPQFNCQKHGRSDQLYQKYRWTPFSCPLPRFNGLDFLQKYRGKKIMYVGDSLSLNQFNSLACMIHAWVPKSRSTFSQRDALSKVTFEDYGLEIYLYRTAYLVDLDREKVGRVLKLDSIKNGDSWMGMDVLIFNTWHWWTHTGSSQPWDYVEVDNRLLKDMNRFVAYYKGLTTWAKWIERNVNPSETKVFFLGISPVHYMGRDWNEAGKSCMSEREPFFGVKYPAGTPMAWVVVNKVLKRIKKPVYFLDVTTLSQYRKDAHPEGYSGVMPVDCSHWCLPGLPDTWNQLLTALLSS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01285 353 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 87 349 IPR026057 GO:0016740
Vimu5g01285 353 Pfam PMR5 N terminal Domain 34 85 IPR025846 -
Vimu5g01285 353 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 16 347 IPR029962 GO:0016413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01285 Vimu-Chr5 22830752 22833571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01285 - - gmx:100786668 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01285 5 22830752 22833571 Vimu5g01285 5 22830752 22833571 ECH
Vimu4g01146 4 10055384 10058663 Vimu5g01285 5 22830752 22833571 PCT