Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1399 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1400 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1401 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1402 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01535 . . . . . . . . . . . . . . . . . .
Pvu11g1403 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1404 Acco08g0809 Accr13g00796 . Aed5g0927 . . . . Alju10g0817 . . . . . Bisa02g3176 . . Cca04g01195 Dere07g0261 . Enph8g0535 Glsi04g0867 . . . . . Lal2g0508 . Lan7g0525 . . . . Lele29g0614 Lele30g0784 Lele31g0925 Lele32g0599 Lja3g3005 . . . Mibi07g0792 . . Phco9g01537 . . . . . . . . Sto4g0074 . . . . . Vimu5g01286 . . .
Pvu11g1405 Acco08g0807 Accr13g00795 . . . . . . . . . . . . Bisa02g3177 . . . . . . Glsi04g0865 . . . . . Lal2g0506 . . . . . . . . . . Lja3g3006 . . . Mibi07g0790 . . . . . . . . . . . Sto4g0076 . . . . . . . Vivi5g03384 .
Pvu11g1406 . . . Aed5g0926 . . . . . . . . . . . . . Cca04g01196 . . . . . . . . . . Lal9g0452 Lan7g0522 . . . . . . . . Lja3g3007 . . . . . . Phco9g01539 . . . . . . . . . . . . . . Vimu5g01287 . Vivi5g03383 .
Pvu11g1407 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01543 . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lja Lja3g3005 Chr3 55876890 55881913 +
Lja Lja3g3006 Chr3 55883184 55884196 -
Lja Lja3g3007 Chr3 55912168 55915843 -
Pvu Pvu11g1398 Chr11 30870317 30870930 -
Pvu Pvu11g1399 Chr11 30875274 30876133 -
Pvu Pvu11g1400 Chr11 30895539 30896010 +
Pvu Pvu11g1401 Chr11 30907458 30907800 -
Pvu Pvu11g1402 Chr11 30923997 30927806 -
Phco Phco9g01535 Chr9 35846262 35850742 -
Pvu Pvu11g1403 Chr11 30930321 30930596 -
Pvu Pvu11g1404 Chr11 30937640 30939302 +
Acco Acco08g0809 Chr08 7203196 7206381 -
Accr Accr13g00796 Chr13 8879672 8882680 -
Aed Aed5g0927 Chr5 7073987 7078852 -
Alju Alju10g0817 Chr10 7186774 7189768 -
Bisa Bisa02g3176 Chr02 80306939 80309696 +
Cca Cca04g01195 Chr04 13850913 13854452 +
Dere Dere07g0261 Chr07 4944528 4947415 +
Enph Enph8g0535 Chr8 14062247 14065856 +
Glsi Glsi04g0867 Chr04 6363304 6366041 -
Lal Lal2g0508 Chr2 3041874 3044439 -
Lan Lan7g0525 Chr7 3841045 3844785 -
Lele Lele29g0614 Chr29 3744598 3746915 -
Lele Lele30g0784 Chr30 12169021 12171062 +
Lele Lele31g0925 Chr31 16647413 16650308 +
Lele Lele32g0599 Chr32 3702597 3704689 -
Lja Lja3g3005 Chr3 55876890 55881913 +
Mibi Mibi07g0792 Chr07 9796803 9799881 -
Phco Phco9g01537 Chr9 35884308 35886576 +
Sto Sto4g0074 Chr4 600075 602730 +
Vimu Vimu5g01286 Chr5 22838283 22839928 +
Pvu Pvu11g1405 Chr11 30944893 30945657 -
Acco Acco08g0807 Chr08 7197076 7197543 +
Accr Accr13g00795 Chr13 8863876 8864342 +
Bisa Bisa02g3177 Chr02 80324329 80324796 -
Glsi Glsi04g0865 Chr04 6353734 6354139 +
Lal Lal2g0506 Chr2 3037413 3049042 +
Lja Lja3g3006 Chr3 55883184 55884196 -
Mibi Mibi07g0790 Chr07 9783046 9783465 +
Sto Sto4g0076 Chr4 610443 610792 -
Vivi Vivi5g03384 Chr5 125242100 125243290 +
Pvu Pvu11g1406 Chr11 30945933 30950992 -
Aed Aed5g0926 Chr5 7069760 7077464 +
Cca Cca04g01196 Chr04 13856790 13863742 -
Lal Lal9g0452 Chr9 2966031 2971984 +
Lan Lan7g0522 Chr7 3830500 3833811 +
Lja Lja3g3007 Chr3 55912168 55915843 -
Phco Phco9g01539 Chr9 35893893 35898048 -
Vimu Vimu5g01287 Chr5 22845181 22848146 -
Vivi Vivi5g03383 Chr5 125234823 125240651 +
Pvu Pvu11g1407 Chr11 30985821 30986626 -
Phco Phco9g01543 Chr9 35945049 35945330 -