Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01527 ATGTCGGCAACCGGTTCTTCTACTTCACTCTGCACCACTTCCAGAACCTTATCCGCTAAGCCCGTTCCCGCCAGAACCTTCGTTGCGTTTCACAAACGCGCGTTCTCCAGGCTCGCCTTCCAATTCAGGCCGCTCTCCATGGCCGCGCTCGGTGTTCGCAACGTGGCCTCTCCCGCCGTGGCCCCGCCGCCCTCTCTCGACTTCGAAACCTCCGTTTTCCGGAAGGAGAAGGTTAACCTCGCCGGACACGACGAGTATATTGTGAAAGGAGGGAGGGATTTGTTCCCTCTGTTGCCGGCTGCTTTCAAGGGGATTAAGCAGATTGGTGTCATCGGGTGGGGTTCGCAGGGACCTGCACAGGCACAGAATTTGCGGGATTCTCTCGCTGATGCGAAGTCTGATATTGTGGTTAAGGTTGGCCTCAGGAAAGGTTCTCGTTCCTTTAATGAGGCTCGTGCAGCTGGTTTTAGTGAGGAGAATGGAACTCTGGGTGACTTATGGGAAACCATCTCAGGCAGTGATCTTGTGTTGCTGTTGATTTCTGATTCTGCACAGGCAGATAATTATGAAAAAATATTTTCCTACATGAAGCCAAATAGCATACTTGGGCTGTCACATGGTTTTCTTCTCGGGCATTTACAATCAATGGGACTTGATTTTCCGAAACACTTCAGTGTAATTGCTGTGTGCCCGAAAGGTATGGGTCCTTCTGTAAGGAGACTGTATGTCCAAGGCAAAGAGATTAATGGGGCTGGAATTAATTCAAGTTTTGCAGTCCACCAGGATGTGGATGGCAGAGCTACTGATGTTGCTCTGGCATGGTCCGTTGCCCTTGGTTCCCCTTTTACATTTGCCACTACGTTAGAGATGGAATACAGGAGTGACATCTTTGGAGAGAGAGGCATTTTACTTGGTGCTGTTCATGGTGTTGTGGAATCCTTGTTTAGGAGGTACACTGAACATGGAATGAATGAAGATTTGGCATATAACAACACTGTTGAGTGCATTACAGGAACTATATCTAGAATCATCTCGACTAAGGGTATGATAGCTGTATACAATGCTTTATCTGAAGATGGAAAAAGGGAATTTGAGAAAGCATATAGTGCTTCATATTATCCCTGCATGGACATTTTGTATGAGTGCTATGAGGATATTGCTGCTGGGAGTGAGATTCGCAGTGTTGTCTTGGCTGGACGTCGCTTTTATGAGAAAGAGGGTCTGCCTGCGTTTCCCATGGGTAAAATTGATCAAACACGGATGTGGAAGGTTGGTGAGCGTGTTCGATCTACAAGGCCAGCAGGTGATCTAGGCCCATTATATCCATTCACTGCCGGTGTCTATGTGGCATTGATGATGGCGCAGATTGAGATCCTGAGGAAGAAGGGACATTCTTACTCTGAAATCATTAACGAGAGTGTCATTGAGTCTGTTGATTCTTTGAATCCTTTCATGCATGCTCGCGGTGTTTCTTTCATGGTTGACAACTGTTCAACCACAGCAAGGTTGGGTTCAAGGAAATGGGCTCCGCGATTTGATTATATCCTAACCCAGCAGGCCTTGGTGGCTGTGGACAATGGAGCACCTATCAACCAAGACCTAATCAGCAACTTCCTGTCAGACCAAGTGCATGGAGCCATTGATGTTTGTGCTCAATTGAGACCCACAGTGGACATTTCAGTGCCACCAGATGCAGACTTTGTCCGTCCTGAGTTGCGTCAGTCTACCAATTAG 1734 0.4764 MSATGSSTSLCTTSRTLSAKPVPARTFVAFHKRAFSRLAFQFRPLSMAALGVRNVASPAVAPPPSLDFETSVFRKEKVNLAGHDEYIVKGGRDLFPLLPAAFKGIKQIGVIGWGSQGPAQAQNLRDSLADAKSDIVVKVGLRKGSRSFNEARAAGFSEENGTLGDLWETISGSDLVLLLISDSAQADNYEKIFSYMKPNSILGLSHGFLLGHLQSMGLDFPKHFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALAWSVALGSPFTFATTLEMEYRSDIFGERGILLGAVHGVVESLFRRYTEHGMNEDLAYNNTVECITGTISRIISTKGMIAVYNALSEDGKREFEKAYSASYYPCMDILYECYEDIAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIDVCAQLRPTVDISVPPDADFVRPELRQSTN 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01527 577 ProSiteProfiles KARI C-terminal domain profile. 287 435 IPR000506 GO:0004455|GO:0009082
Phco9g01527 577 Pfam Acetohydroxy acid isomeroreductase, catalytic domain 446 515 IPR000506 GO:0004455|GO:0009082
Phco9g01527 577 Pfam Acetohydroxy acid isomeroreductase, catalytic domain 289 433 IPR000506 GO:0004455|GO:0009082
Phco9g01527 577 PANTHER KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL 65 465 IPR013023 GO:0009082|GO:0016491
Phco9g01527 577 ProSiteProfiles KARI N-terminal domain profile. 88 286 IPR013116 -
Phco9g01527 577 Gene3D - 282 555 IPR013328 GO:0016491
Phco9g01527 577 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 66 284 IPR036291 -
Phco9g01527 577 Gene3D - 54 281 - -
Phco9g01527 577 FunFam Ketol-acid reductoisomerase 54 281 - -
Phco9g01527 577 ProSiteProfiles KARI C-terminal domain profile. 436 572 IPR000506 GO:0004455|GO:0009082
Phco9g01527 577 Pfam Acetohydroxy acid isomeroreductase, NADPH-binding domain 106 280 IPR013116 -
Phco9g01527 577 FunFam Ketol-acid reductoisomerase 282 555 - -
Phco9g01527 577 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 289 574 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01527 Phco-Chr9 35659442 35663761 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01527 9 35659442 35663761 Phco9g01527 9 35659442 35663761 ECH
Phco10g01119 10 32958063 32962465 Phco9g01527 9 35659442 35663761 PCT