LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01281	ATGTCGACAACCGCTTCTTTTACTTCACTCTGCGCCACTTCCAGAACCTTCTACGCTAAGCCCGTCCTCACCAAAACCTTTGTCGCGTTTCCCAAACGCGCGTTCTCCAAGCTCGCCTTCCAATTCAGGCCCCTCTCAATGGCTGCACTCGGTGCTCGCAATGTGGCCGCGCCCGCCGTGGCCCCGCCACCCTCGCTGGACTTCGAAACCTCCGTTTTCCTGAAGGAGAAGATTAACCTCGCCGGACACGACGAGTGTATTGTGAAAGGAGGGAGGGACTTGTTCCCTCTACTGCCGGCTGCTTTCAAGGGGATTAAGCAGATTGGTGTCATCGGATGGGGTTCGCAGGGACCAGCACAGGCACAGAATTTGCGGGACTCTCTTGCTGATGCAAAGTCTGATATTGTGGTTAAGGTTGGCCTCAGGAAAGGTTCTCGTTCCTTTAATGAGGCTCGTGCAGCTGGTTTTAGTGAGGAGAATGGAACTCTGGGTGACATATGGGAAACCATCTCAGGCAGTGATCTTGTGTTGCTGTTGATTTCTGATTCTGCACAGGCAGATAATTATGAAAAAATATTTTCCTACATGAAGCCAAATAGCATACTTGGGCTGTCACATGGTTTTCTTCTTGGGCATTTACAGTCAATGGGACTTGATTTTCCGAAGCAGTTCAGTGTAATTGCTGTATGCCCGAAAGGTATGGGTCCTTCTGTAAGGAGACTGTATGTCCAAGGCAAAGAGATAAATGGGGCTGGAATTAATTCAAGTTTTGCAGTCCACCAGGACGTGGATGGCAGAGCTACTGATGTTGCTCTGGCATGGTCCGTTGCCCTTGGTTCCCCTTTTACATTTGCCACTACATTAGAGATGGAATACAGGAGCATTTTGCTTGGGGCTGTTCACGGTGTTGTGGAATCCTTGTTTAGGAGGTACACTGAACATGGAATGAATGAGGATTTGGCATATAACAACACTGTTGAGAGCATTACAGGAACTATATCTAGAATCATCTCGACTAAGGGCATGTTAGCTGTATACAATGCTTTATCTGAAGATGGAAAAAGGGAATTTGAGAAAGCATATAGTGCTTCATATTATCCCTGCATGGACATTTTGTACGAGTGCTATGAGGATATTGCTGCTGGGAGTGAGATTCGCAGTGTTGTCTTGGCTGGACGTCGCTTTTATGAGAAAGAGGGTCTGCCTGCCTTTCCCATGGGGAAAATTGATCAAACCAGGATGTGGAAGGTTGGTGAGCGTGTCCGATCTACAAGGCCAGCGGGTGATCTAGGCCCATTATATCCGTTTACGGCCGGTGTCTATGTGGCATTAATGATGGCGCAGATTGAGATCTTGAGGAAGAAGGGACATTCTTACTCTGAAATCATTAACGAGAGTGTGATTGAGTCTGTTGACTCTTTGAATCCTTTCATGCATGCTCGCGGTGTTTCTTTCATGGTTGATAACTGTTCAACCACAGCAAGGTTGGGTTCAAGGAAATGGGCTCCCCGATTTGATTACATCCTAACCCAGCAGGCCTTGGTGGCTGTGGACAATGGAGCACCTATCAACCAAGATCTAATCAGCAACTTCCTGTCAGACCAAGTCCATGGAGCCATTGAACTTTGTGCTCAATTGAGACCTACAGTGGACATTTCAGTGCCACCAGATGCAGACTTTGTCCGTCCTGAGTTGCGTCAGTCTACCAGTTAG	1713	0.4775	MSTTASFTSLCATSRTFYAKPVLTKTFVAFPKRAFSKLAFQFRPLSMAALGARNVAAPAVAPPPSLDFETSVFLKEKINLAGHDECIVKGGRDLFPLLPAAFKGIKQIGVIGWGSQGPAQAQNLRDSLADAKSDIVVKVGLRKGSRSFNEARAAGFSEENGTLGDIWETISGSDLVLLLISDSAQADNYEKIFSYMKPNSILGLSHGFLLGHLQSMGLDFPKQFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALAWSVALGSPFTFATTLEMEYRSILLGAVHGVVESLFRRYTEHGMNEDLAYNNTVESITGTISRIISTKGMLAVYNALSEDGKREFEKAYSASYYPCMDILYECYEDIAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIELCAQLRPTVDISVPPDADFVRPELRQSTS	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g01281	570	Gene3D	-	282	548	IPR013328	GO:0016491
	Vimu5g01281	570	ProSiteProfiles	KARI N-terminal domain profile.	88	286	IPR013116	-
	Vimu5g01281	570	ProSiteProfiles	KARI C-terminal domain profile.	429	565	IPR000506	GO:0004455\|GO:0009082
	Vimu5g01281	570	FunFam	Ketol-acid reductoisomerase	54	281	-	-
	Vimu5g01281	570	FunFam	Ketol-acid reductoisomerase	282	548	-	-
	Vimu5g01281	570	SUPERFAMILY	6-phosphogluconate dehydrogenase C-terminal domain-like	293	567	IPR008927	-
	Vimu5g01281	570	Pfam	Acetohydroxy acid isomeroreductase, catalytic domain	293	426	IPR000506	GO:0004455\|GO:0009082
	Vimu5g01281	570	Pfam	Acetohydroxy acid isomeroreductase, catalytic domain	439	508	IPR000506	GO:0004455\|GO:0009082
	Vimu5g01281	570	Pfam	Acetohydroxy acid isomeroreductase, NADPH-binding domain	106	280	IPR013116	-
	Vimu5g01281	570	Gene3D	-	54	281	-	-
	Vimu5g01281	570	ProSiteProfiles	KARI C-terminal domain profile.	283	428	IPR000506	GO:0004455\|GO:0009082
	Vimu5g01281	570	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	66	284	IPR036291	-
	Vimu5g01281	570	PANTHER	KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL	65	458	IPR013023	GO:0009082\|GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g01281	Vimu-Chr5	22762023	22766197	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01281	K00053		-	gmx:100789879	992.645

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu5g01281	5	22762023	22766197	Vimu5g01281	5	22762023	22766197	ECH
	Vimu4g01152	4	10140395	10144971	Vimu5g01281	5	22762023	22766197	PCT