Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0933 ATGTCAGCCACTGCTTCTTCACTCTGCGGCACCACTTCCAGAACTACCTTCTCCTCAGTCGCGACGAGAAGCAGCTCCGTCGCAGTTCCCAGTCGCGCGTTCCCGAAGCTCCGTTTCAAACCCGTCGCTATGGCTACTCTCGGCGCTCGCATGGTGGTGACACCCGCCGTTACTCCGACGCCGGCCTCGCTCGACTTCGAAACCTCCGTTTTCAAGAAGGAGAAGATTAACCTCTCCGGACACGACGAGTTCATCGTGAAAGGAGGGAGGGACTTGTTCCCTCTGTTGCAGGGTGCTTTCAAGGGGATTAAGCAGATTGGTGTCATCGGATGGGGTTCCCAGGGACCTGCGCAGGCTCAGAATTTGCGGGACTCGCTTGCTGATGCCAAGTCTGATGTTGTGGTTAAGGTTGGGCTCAGGAAAGGTTCTCGTTCCTTTAATGAGGCCCGAGCAGTTGGTTTTAGTGAGGAAAATGGAACTCTGGGTGACATATGGGAAACTATCTCGGGCAGTGATCTTGTGTTGCTGTTGATTTCTGATTCTGCACAGGCTGATAACTATGAAAAAATATTTTCCCACATGAAACCAAATGGCATACTGGGGCTTTCCCATGGTTTTCTTCTTGGGCATTTACAGTCAATGGGACTTGATTTTCCCAAGAACTTCAGTGTAATTGCTGTATGCCCGAAAGGTATGGGTCCTTCTGTAAGGAGGCTGTATGTCCAAGGCAAAGAGATAAATGGTGCTGGAATCAATTCAAGTTTTGCAGTCCACCAGGATGTGGATGGCAGAGCTACTGATGTTGCTTTGGCATGGTCTGTTGCGCTGGGTTCCCCTTTTACATTTGCCACTACGTTAGAGATGGAATACAGGAGCGACATCTTTGGGGAGAGAGGCATGAATATCTCTCTCTCTGTGAGCATTTTACTTGGTGCTGTTCATGGTATCGTGGAATCCTTGTTTAGGAGGTACACTGAACATGGAATGAGTGAAGAATTGGCTTATAACAACACTGTTGAGTCCATTACAGGAACTATATCTAGAATAATCTCGACTAAGGGCATGTTGGCTGTATACAATGCTTTATCTGAAGATGATAAAAGGGAATTTGAGAAAGCATATAGTGCTTCATATTATCCCTGCATGGACATTTTGTATGAGTGCTATGAGGATATTGCTGCTGGCAGTGAGATTCGCAGTGTTGTCTTGGCCGGACGCCGCTTTTATGAGAAAGAGGGTCTGCCAGCGTTTCCCATGGGTAAGATTGATCAGACCCGGATGTGGAAGGTTGGTGAGCGTGTCCGATCTACAAGGTCAGCAGGTGATCTAGGTCCATTATACCCATTTACTGCTGGGGTCTATGTGGCATTGATGATGGCCCAGATTGAGATCCTGAGGAGGAAGGGGCATTCTTACTCTGAAATCATTAACGAGAGTGTCATTGAGTCTGTTGATTCTCTGAATCCTTTCATGCATGCTCGTGGTGTTTCCTTCATGGTTGATAACTGTTCAACCACGGCAAGGTTGGGTTCAAGGAAATGGGCTCCCCGGTTCGATTACATCCTAACACAGCAGGCCTTGGTGGCTGTGGACAATGGAGCACCTATCAACCAAGACCTAATCAGCAACTTCCTGTCAGACCAAGTGCATGGAGCTATTGAAGTTTGTGCTCAACTGAGACCTACAGTTGACATTTCTGTACCACCAGATGCAGACTTTGTCCGTCCCGAGTTGCGTCAGTCTTGCAATTAG 1752 0.4812 MSATASSLCGTTSRTTFSSVATRSSSVAVPSRAFPKLRFKPVAMATLGARMVVTPAVTPTPASLDFETSVFKKEKINLSGHDEFIVKGGRDLFPLLQGAFKGIKQIGVIGWGSQGPAQAQNLRDSLADAKSDVVVKVGLRKGSRSFNEARAVGFSEENGTLGDIWETISGSDLVLLLISDSAQADNYEKIFSHMKPNGILGLSHGFLLGHLQSMGLDFPKNFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALAWSVALGSPFTFATTLEMEYRSDIFGERGMNISLSVSILLGAVHGIVESLFRRYTEHGMSEELAYNNTVESITGTISRIISTKGMLAVYNALSEDDKREFEKAYSASYYPCMDILYECYEDIAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRSAGDLGPLYPFTAGVYVALMMAQIEILRRKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIEVCAQLRPTVDISVPPDADFVRPELRQSCN 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0933 583 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 287 580 IPR008927 -
Aed5g0933 583 Pfam Acetohydroxy acid isomeroreductase, NADPH-binding domain 104 278 IPR013116 -
Aed5g0933 583 ProSiteProfiles KARI N-terminal domain profile. 86 284 IPR013116 -
Aed5g0933 583 Pfam Acetohydroxy acid isomeroreductase, catalytic domain 452 521 IPR000506 GO:0004455|GO:0009082
Aed5g0933 583 Pfam Acetohydroxy acid isomeroreductase, catalytic domain 287 438 IPR000506 GO:0004455|GO:0009082
Aed5g0933 583 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 64 282 IPR036291 -
Aed5g0933 583 PANTHER KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL 35 582 IPR013023 GO:0009082|GO:0016491
Aed5g0933 583 PANTHER KETOL-ACID REDUCTOISOMERASE 35 582 - -
Aed5g0933 583 ProSiteProfiles KARI C-terminal domain profile. 442 578 IPR000506 GO:0004455|GO:0009082
Aed5g0933 583 Gene3D - 51 279 - -
Aed5g0933 583 Gene3D - 280 561 IPR013328 GO:0016491
Aed5g0933 583 ProSiteProfiles KARI C-terminal domain profile. 285 441 IPR000506 GO:0004455|GO:0009082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0933 Aed-Chr5 7140222 7144060 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0933 K00053 - gmx:100789879 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0933 5 7140222 7144060 Aed5g0933 5 7140222 7144060 ECH
Aed1g0761 1 8605580 8609563 Aed5g0933 5 7140222 7144060 PCT