Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1358 . . . . . . . . . . . . Arst3g01466 . . Bva07g00972 . . . . . . . . Gso12g1040 . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst11g00871 . . . . . . . Vimu5g01257 . Vivi5g03014 .
Pvu11g1359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1360 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g02658 . . . . . . . . . . . Phco9g01503 . . Pste1g03602 . . . . . . . . . . . Vimu5g01280 . . Vra2g1175
Pvu11g1361 . . . . . . Ahy13g0808 . . . . . Arst3g01465 . . Bva07g00970 . . . . . . . . . Gso6g2322 . . . . . . . . . . . . . . . . . . . . . . Pste1g03603 . . . Spst11g00868 . . . . . . . Vimu5g01258 . Vivi5g03013 .
Pvu11g1362 . . . . . . . . . . . . Arst3g01464 . . Bva07g00968 . . . . . . . . Gso12g1043 . . . . . . . . . . . . . . . . . . . . . . . Pste1g03605 . . . Spst11g00867 . . . . . . . . . Vivi5g03012 .
Pvu11g1363 . . . . . . . . . . Amo03g0388 Apr3g0959 . . . . . . . . . . . . . Gso6g2309 . . . . . . . . . . . . . . . . . . . Phco9g01504 . Psa7g3168 . . . . . . . . . . . . Vimu5g01259 . . .
Pvu11g1364 . . . . . . . . . . . . Arst3g01462 . . Bva07g00967 . . . . . . . . Gso12g1045 Gso6g2308 . . . . . . . . . . . . . . . . . . . . . . Pste1g03607 . . . Spst11g00865 . . . . . . . Vimu5g01262 . . .
Pvu11g1365 . . . . . . . . . Amo13g0825 . . Arst3g01461 . . Bva07g00966 . . . . . . . . Gso12g1047 . . . . . . . Lapu11g01381 . . . . . Lja3g0888 . . . . . . . . . Pste1g03609 . . . Spst11g00864 . . . . . . . Vimu5g01263 . Vivi5g03011 .
Pvu11g1366 . . . . . . . . . . Amo03g0387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01506 . . . . . . Spst11g00862 . . . . . . . Vimu5g01277 . . .
Pvu11g1367 . . . . . . Ahy13g1692 . . . . . . . . Bva07g01898 . . . . . . Gma12g01172 . . Gso6g2304 . Lal2g0511 . . . . Lapu11g01392 . . . . . Lja3g0864 . . . . . . Phco9g01510 . . . . . . Spst11g00861 Ssu3g2031 . . . . . . Vimu5g01264 . . .
   
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Select Species Gene Chromosome Start End Strand
Arst Arst3g01462 Chr3 13144624 13147820 +
Arst Arst3g01461 Chr3 13139086 13143139 +
Ahy Ahy13g0808 Chr13 8508153 8509562 -
Pvu Pvu11g1358 Chr11 29622728 29623291 +
Arst Arst3g01466 Chr3 13162023 13163011 +
Bva Bva07g00972 Chr07 11575724 11576002 +
Gso Gso12g1040 Chr12 13701169 13701898 -
Spst Spst11g00871 Chr11 32783911 32784593 +
Vimu Vimu5g01257 Chr5 22610844 22614944 -
Vivi Vivi5g03014 Chr5 118336235 118336869 +
Pvu Pvu11g1359 Chr11 29623518 29623646 -
Pvu Pvu11g1360 Chr11 29623800 29624653 -
Lasa Lasa7g02658 Chr7 538182874 538183965 -
Phco Phco9g01503 Chr9 35203127 35204238 -
Pste Pste1g03602 Chr1 17124338 17125655 +
Vimu Vimu5g01280 Chr5 22754764 22755914 +
Vra Vra2g1175 Chr2 15610471 15611770 +
Pvu Pvu11g1361 Chr11 29626687 29627157 +
Ahy Ahy13g0808 Chr13 8508153 8509562 -
Arst Arst3g01465 Chr3 13160853 13161988 -
Bva Bva07g00970 Chr07 11570870 11571293 +
Gso Gso6g2322 Chr6 44486138 44486884 +
Pste Pste1g03603 Chr1 17126311 17133960 -
Spst Spst11g00868 Chr11 32773470 32773721 +
Vimu Vimu5g01258 Chr5 22615767 22617310 +
Vivi Vivi5g03013 Chr5 118330567 118335187 -
Pvu Pvu11g1362 Chr11 29628043 29628684 -
Arst Arst3g01464 Chr3 13159283 13160256 +
Bva Bva07g00968 Chr07 11567093 11567368 +
Gso Gso12g1043 Chr12 13722870 13723384 +
Pste Pste1g03605 Chr1 17127216 17134798 +
Spst Spst11g00867 Chr11 32772436 32772711 -
Vivi Vivi5g03012 Chr5 118327785 118328174 -
Pvu Pvu11g1363 Chr11 29670887 29671813 -
Amo Amo03g0388 Chr03 7200433 7203598 +
Apr Apr3g0959 Chr3 24500055 24501459 +
Gso Gso6g2309 Chr6 44406451 44407566 -
Phco Phco9g01504 Chr9 35205269 35208813 +
Psa Psa7g3168 Chr7 234612530 234621452 -
Vimu Vimu5g01259 Chr5 22634133 22635038 +
Pvu Pvu11g1364 Chr11 29674124 29675180 +
Arst Arst3g01462 Chr3 13144624 13147820 +
Bva Bva07g00967 Chr07 11565304 11565699 +
Gso Gso12g1045 Chr12 13755087 13755628 -
Gso Gso6g2308 Chr6 44399358 44399935 -
Pste Pste1g03607 Chr1 17145256 17192406 +
Spst Spst11g00865 Chr11 32754990 32755241 -
Vimu Vimu5g01262 Chr5 22660674 22661252 -
Pvu Pvu11g1365 Chr11 29703476 29703973 +
Amo Amo13g0825 Chr13 10415571 10415997 -
Arst Arst3g01461 Chr3 13139086 13143139 +
Bva Bva07g00966 Chr07 11563227 11563652 +
Gso Gso12g1047 Chr12 13774539 13775026 +
Lapu Lapu11g01381 Chr11 16196212 16196589 +
Lja Lja3g0888 Chr3 9013410 9014003 +
Pste Pste1g03609 Chr1 17146513 17190825 -
Spst Spst11g00864 Chr11 32748169 32748418 +
Vimu Vimu5g01263 Chr5 22666614 22668221 -
Vivi Vivi5g03011 Chr5 118322708 118323010 -
Pvu Pvu11g1366 Chr11 29707940 29709057 +
Amo Amo03g0387 Chr03 7186927 7189682 +
Phco Phco9g01506 Chr9 35251814 35252929 -
Spst Spst11g00862 Chr11 32744515 32745621 +
Vimu Vimu5g01277 Chr5 22740543 22741652 +
Pvu Pvu11g1367 Chr11 29752480 29753597 -
Ahy Ahy13g1692 Chr13 26190218 26192436 -
Bva Bva07g01898 Chr07 16985685 16986815 -
Gma Gma12g01172 Chr12 14938813 14940155 +
Gso Gso6g2304 Chr6 44374033 44377266 -
Lal Lal2g0511 Chr2 3059054 3060769 -
Lapu Lapu11g01392 Chr11 16236333 16253290 +
Lja Lja3g0864 Chr3 8728762 8732581 -
Phco Phco9g01510 Chr9 35327585 35328651 -
Spst Spst11g00861 Chr11 32741488 32742600 -
Ssu Ssu3g2031 Chr3 67181494 67182612 +
Vimu Vimu5g01264 Chr5 22670886 22672001 +
Vimu Vimu5g01264 Chr5 22670886 22672001 +
Vimu Vimu5g01263 Chr5 22666614 22668221 -
Vimu Vimu5g01259 Chr5 22634133 22635038 +
Vimu Vimu5g01258 Chr5 22615767 22617310 +
Lal Lal2g0511 Chr2 3059054 3060769 -
Vimu Vimu5g01280 Chr5 22754764 22755914 +