Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01277 ATGATTGCAAAAAATCAACTCTATCATATTTCACTGACATTGCTTTTCTGCATGGGATTCTGGGGTTTCCAAGTCACATGTCGCACCCTCCAAGATGTCTCCATGTATGAGAGGCATGAAAAGTGGATGACTGGTCATGGCATAGTGTACAAGGACCCTGAGGAAAGGGAAAAACGTTTCAGAATATTCAAGAAAAATGTGAATTACATTGAAGCCTCCAACAATGCTGCCAATAAACCTTACCTACTAGGCACTAATCAATTTGCAGACCTCACCAACGAGGAGTTCATAGCACGCAGAAATAGGTTCAAGAGGCACATGTTTTCCTCAATCATAAGGTCAACCACTTTCAAGTATGAAAATGTGACTGCAATTCCTTCTACTGTGGACTGGAGGCAAAAGGGTGCAGTTACACCCGTGAAGAACCAAGGTCAATGTGGATGTTGTTGGGCGTTTTCCGCCGTTGCAGCAACGGAAGGAATTCATGCAATCACTACTGGGAAACTGATCTCTTTATCAGAACAAGAACTTGTTGATTGTGACACAAAAGGTATGGACCAGGGTTGTGAAGGTGGTTATATGGATGATGCTTTCAAATTCATCATTAAAAATCATGGACTCAACACCGAAGCCAATTACCCCTACGAGGGTTTTGATGGAAACTGCAATGCAAAGGCAGAAGCCATCGATGCTGCAACCATTACTGGGTACGAAGATGTCCCTGTTAACAATGAGAAAGCCCTTCAGAAAGCGGTTGCCAATCAACCAGTTTCTGTAGCAATTGATTCCAGTGGCTTTGACTTTCAATTTTACATGAGTGGTATCTTCACTGGTTCTTGTGGAACTGAACCGGATCATGGTGTGACTGCCGTGGGATACGGTGTTAGTGATGATGGGAGCAAGTATTGGTTAGTTAAGAACTCATGGGGAACAGAGTGGGGTGAAGAAGGTTACATTAGGATGCAAAGAGGTGTGGCTGCTCAAGAAGGACTATGTGGCATAGCTATGACAGCATCTTATCCTACTGCATAA 1032 0.4341 MIAKNQLYHISLTLLFCMGFWGFQVTCRTLQDVSMYERHEKWMTGHGIVYKDPEEREKRFRIFKKNVNYIEASNNAANKPYLLGTNQFADLTNEEFIARRNRFKRHMFSSIIRSTTFKYENVTAIPSTVDWRQKGAVTPVKNQGQCGCCWAFSAVAATEGIHAITTGKLISLSEQELVDCDTKGMDQGCEGGYMDDAFKFIIKNHGLNTEANYPYEGFDGNCNAKAEAIDAATITGYEDVPVNNEKALQKAVANQPVSVAIDSSGFDFQFYMSGIFTGSCGTEPDHGVTAVGYGVSDDGSKYWLVKNSWGTEWGEEGYIRMQRGVAAQEGLCGIAMTASYPTA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01277 343 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 337 IPR013128 GO:0008234
Vimu5g01277 343 Pfam Papain family cysteine protease 125 342 IPR000668 GO:0006508|GO:0008234
Vimu5g01277 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Vimu5g01277 343 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Vimu5g01277 343 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Vimu5g01277 343 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Vimu5g01277 343 SUPERFAMILY Cysteine proteinases 32 341 IPR038765 -
Vimu5g01277 343 Gene3D Cysteine proteinases 24 343 - -
Vimu5g01277 343 SMART Inhibitor_I29_2 39 96 IPR013201 -
Vimu5g01277 343 SMART pept_c1 125 342 IPR000668 GO:0006508|GO:0008234
Vimu5g01277 343 CDD Peptidase_C1A 126 341 IPR039417 -
Vimu5g01277 343 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Vimu5g01277 343 FunFam Senescence-specific cysteine protease SAG39 20 343 - -
Vimu5g01277 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01277 Vimu-Chr5 22740543 22741652 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01277 - K16292 gmx:102666929 609.372