Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2031 ATGAGTTCATTTAACCAAAACCACTATATTTTAGTTCTGTTCCTCGTTCTCACTGTATGGACATCCCACGTAATGTCTCGCAGGCTCATAACATCCGAGCGACATGAGAAGTGGATGGCACAATATGGTAAGATTTACAAGGATGCTGCTGAGAAGGAAAAACGTTTCAAAATATTCAAGAACAATGTGCAGTTCATTGAGTCATTCAACGCTGCTGGGGACAAACCTTTCAGCCTTAGCATTAACCAATTTGCGGATCTACATAATGAAGAATTTaaggttttattaattaatggtaaCAAGAAGGCACATAGCGTGGGGACAGCAACAGAAACATCGTTTAAGTATGGCAGTGTAACTAAGATTCCTGCCACCATGGACTGGAGGAAAAGAGGTGCTGTTACTCCAATCAAGGACCAAGGCACATGTCAAAGTTGTTGGGCATTTTCAACTGTGGCTACAATTGAGGGTCTCCACCAAATAACTGCAGGTGAATTGGTGTCCCTATCAGAGCAAGAACTAGTAGATTGTGTTAAAGGTGACAGCGAAGGATGCCATGGTGGTTATGCGGAAGATGCCTTTGAATTTATTGCCAAGAAAGGTGGAATAGCAAGTGAAGCATACTATCCTTACAAAGGAAAAGATAGAACATGTAAGGTTACGAAGGAGACTCATGGTGTAGCTCGGATTAAAGGGTATGAGAAAGTTCCTGCTAATAGTGAGAAGGCACTACTGAAAGCCGTGGCAAATCAACCAGTGTCAGTTTACATTGATGCTGAAGGACCTGCTTTTCAATTTTACTCAAGTGGGGTTTTCACAGGAAAATGTGGAACCAATCTAAACCATGCTGTTACAGTAGTTGGTTATGGTAAAGTTCAGGGGGGTACTAAGTATTGGCTAGTAAAAAATTCATGGGGCACTGAATGGGGTGAGCAAGGGTACATAAGGATGAAGCGAAACATACATGCCAAGAAAGGCCTGTGCGGAATTGCTGCAAATGCCTCTTATCCAATTGCTTAG 1020 0.4157 MSSFNQNHYILVLFLVLTVWTSHVMSRRLITSERHEKWMAQYGKIYKDAAEKEKRFKIFKNNVQFIESFNAAGDKPFSLSINQFADLHNEEFKVLLINGNKKAHSVGTATETSFKYGSVTKIPATMDWRKRGAVTPIKDQGTCQSCWAFSTVATIEGLHQITAGELVSLSEQELVDCVKGDSEGCHGGYAEDAFEFIAKKGGIASEAYYPYKGKDRTCKVTKETHGVARIKGYEKVPANSEKALLKAVANQPVSVYIDAEGPAFQFYSSGVFTGKCGTNLNHAVTVVGYGKVQGGTKYWLVKNSWGTEWGEQGYIRMKRNIHAKKGLCGIAANASYPIA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2031 339 Pfam Papain family cysteine protease 122 338 IPR000668 GO:0006508|GO:0008234
Ssu3g2031 339 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 338 - -
Ssu3g2031 339 SMART Inhibitor_I29_2 35 92 IPR013201 -
Ssu3g2031 339 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 280 290 IPR025660 -
Ssu3g2031 339 Gene3D Cysteine proteinases 16 339 - -
Ssu3g2031 339 PANTHER SENESCENCE-ASSOCIATED GENE 12 24 338 - -
Ssu3g2031 339 PRINTS Papain cysteine protease (C1) family signature 298 304 IPR000668 GO:0006508|GO:0008234
Ssu3g2031 339 PRINTS Papain cysteine protease (C1) family signature 282 292 IPR000668 GO:0006508|GO:0008234
Ssu3g2031 339 PRINTS Papain cysteine protease (C1) family signature 140 155 IPR000668 GO:0006508|GO:0008234
Ssu3g2031 339 SUPERFAMILY Cysteine proteinases 33 338 IPR038765 -
Ssu3g2031 339 SMART pept_c1 122 338 IPR000668 GO:0006508|GO:0008234
Ssu3g2031 339 CDD Peptidase_C1A 123 337 IPR039417 -
Ssu3g2031 339 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 298 317 IPR025661 -
Ssu3g2031 339 Pfam Cathepsin propeptide inhibitor domain (I29) 35 92 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2031 Ssu-Chr3 67181494 67182612 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2031 - - gmx:100814159 574.704