Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0387 ATGGCTCCAATTAGCAAAAACGTGCATGTTTTATTGGCTCTAGTGCTCATTATTCTTACAATTTGCACTTCCCATGTAATGTCCTCTCGAAAGTTCAATAATGAAGCATCATGGTCAATGTACCAAAGACATGAGCAATGGATGTTAGAATATGGCATAGTGTACAAGAATGGTGAGGAGAAGGAGAAACGTTTCTTGATATTCAAGGACAACGTTGAATTGATAGAGTCATTTAACGCTGCTGGGAACAAGCCTTACAAGCTTGGTGTTAATCACTTAGCTGATCTTACCAATGAGGAATTCAAGGCTTCACGTAATGGATACATGAGATCAAATAATTCACCTCCAACATCATTCAAGTATGAAAATGTCACTGATGTTCCAAATGCAATTGACTGGAGGCAGAATGGAGCTGTTACTCCAGTCAAGAACCAAGGCAGTTGCGGATGTTGTTGGGCATTTTCAACCGTTGCTGCAACCGAAGGCATCCACCAGATTACTACAGGCAACCTTGTGTCCCTCTCAGAGCAAGAGCTTGTGGACTGTGATAACGTGGATCAAGGTTGCGAGGGAGGTCTCATGGAAAATGGCTTTGAATTCATCATAAAAAATGGTGGAATCACCACTGAGTCAAACTACCCTTACAAAGGAGTTGATGAAACTTGTGACACAAGTGAAGAGGCTTCTCCAGCAGCTCAGATAAAAGGGTACCAGCGGGTGCCTGCAAACAGCGAGCACGCACTTCAACAAGCCGTGGCGAACCAACCGGTTTCTGTTTCCATTGATGCTAGTGGATCTGCTTTCCAATTCTACTCGAGTGGCGTCTTCACCGGTGAATGTGGGACTCAACTTGACCATGGTGTTACTGCAGTTGGTTACGGTGCAGATGATGATGGTACTGAGTATTGGATAGTAAAAAATTCATGGGGCACACAATGGGGCGAGGATGGTTACATAAGAATGAAGAAGGGAATAGATGCTACTGAAGGGTTGTGTGGCATTGCTATGGATGCCTCTTATCCCACTGCTTAA 1032 0.439 MAPISKNVHVLLALVLIILTICTSHVMSSRKFNNEASWSMYQRHEQWMLEYGIVYKNGEEKEKRFLIFKDNVELIESFNAAGNKPYKLGVNHLADLTNEEFKASRNGYMRSNNSPPTSFKYENVTDVPNAIDWRQNGAVTPVKNQGSCGCCWAFSTVAATEGIHQITTGNLVSLSEQELVDCDNVDQGCEGGLMENGFEFIIKNGGITTESNYPYKGVDETCDTSEEASPAAQIKGYQRVPANSEHALQQAVANQPVSVSIDASGSAFQFYSSGVFTGECGTQLDHGVTAVGYGADDDGTEYWIVKNSWGTQWGEDGYIRMKKGIDATEGLCGIAMDASYPTA* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0387 343 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Amo03g0387 343 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Amo03g0387 343 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Amo03g0387 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Amo03g0387 343 SMART Inhibitor_I29_2 44 101 IPR013201 -
Amo03g0387 343 SMART pept_c1 127 342 IPR000668 GO:0006508|GO:0008234
Amo03g0387 343 Pfam Papain family cysteine protease 127 342 IPR000668 GO:0006508|GO:0008234
Amo03g0387 343 Pfam Cathepsin propeptide inhibitor domain (I29) 44 101 IPR013201 -
Amo03g0387 343 Gene3D Cysteine proteinases 19 343 - -
Amo03g0387 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Amo03g0387 343 PANTHER SENESCENCE-ASSOCIATED GENE 12 34 342 - -
Amo03g0387 343 CDD Peptidase_C1A 128 341 IPR039417 -
Amo03g0387 343 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 342 - -
Amo03g0387 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
Amo03g0387 343 SUPERFAMILY Cysteine proteinases 37 342 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0387 Amo-Chr3 7186927 7189682 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0387 - - gmx:100815212 524.628