Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01264 ATGGTTGCAAAAAGTCAGTTCTATTATATTTTATTTACATTGCTTTTCTGCATGGGATTCTTGAGTTTCCAAGTCACATGTCGCACCCTCCAAGATGTCTCCATGTATGAGAGACATGAACAATGGATGAATCGTTATGGCATAGAGTACAAGGACGCTGAGGAAAGGGAAAAACGTTTCAGAATATTTGAGGAAAATGTGAATTATATCGAAGCCTCCAACAGTGCTACAAATAAACCTTATCTGCTAGGCATTAACCAATTTGCAGACCTCACCAACGAGGAGTTCATAGCACGCAGAAATAGGTTCAAGGCCCACATGTGTTCCTCAATCATAAGGTCAACCACTTTTAAGTATGAAAATGTTACTGCAATTCCTTCTGCAGTGGACTGGAGGCAAAAGGGTGCAGTTACACCCGTGAAGAACCAAGGTCAATGTGGATGTTGTTGGGCGTTTTCCGCCGTTGCAGCAACGGAAGGAATTCATGCAATCACTACTGGGAAACTGATCTCTTTATCTGAACAAGAACTCGTTGATTGTGACATAAAAGGTGTGGACCAGGGTTGTGAAGGTGGATTTATGGATGATGCTTTCAAATTCATCATTAAAAATCATGGACTCAACACCGAAGGCAATTACCCCTACGAGGGTGTTGATGGAAAATGCAATGCAAAGGCAGAAGCCATCGATGCTGCAACCATTACTGGGTACGAAGATGTCCCTGTTAACAATGAGAAAGCCCTTCAGAAAGCGGTTGCCAATCAACCAGTTTCTGTAGCCATTGATGCCAGTGGCTCTGACTTTCAATTTTACAAGAGTGGTGTCTTCACTGGTTCTTGTGGAACTGAACTGGATCACGGTGTGACTGCTGTGGGATATGGTGTTAGTGATGATGGGAGCAAGTATTGGTTAGTTAAGAACTCATGGGGAACAGAGTGGGGTGAAGAAGGTTACATTAGGATGCAAAGAGGTGTGGCTGCTCAAGAAGGACTCTGTGGCATAGCTATGATGGCATCTTATCCTACTGCATAA 1032 0.4322 MVAKSQFYYILFTLLFCMGFLSFQVTCRTLQDVSMYERHEQWMNRYGIEYKDAEEREKRFRIFEENVNYIEASNSATNKPYLLGINQFADLTNEEFIARRNRFKAHMCSSIIRSTTFKYENVTAIPSAVDWRQKGAVTPVKNQGQCGCCWAFSAVAATEGIHAITTGKLISLSEQELVDCDIKGVDQGCEGGFMDDAFKFIIKNHGLNTEGNYPYEGVDGKCNAKAEAIDAATITGYEDVPVNNEKALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSDDGSKYWLVKNSWGTEWGEEGYIRMQRGVAAQEGLCGIAMMASYPTA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01264 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Vimu5g01264 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Vimu5g01264 343 SMART Inhibitor_I29_2 39 96 IPR013201 -
Vimu5g01264 343 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 340 IPR013128 GO:0008234
Vimu5g01264 343 Gene3D Cysteine proteinases 22 343 - -
Vimu5g01264 343 SMART pept_c1 125 342 IPR000668 GO:0006508|GO:0008234
Vimu5g01264 343 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Vimu5g01264 343 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Vimu5g01264 343 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Vimu5g01264 343 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Vimu5g01264 343 FunFam Senescence-specific cysteine protease SAG39 20 343 - -
Vimu5g01264 343 Pfam Papain family cysteine protease 125 342 IPR000668 GO:0006508|GO:0008234
Vimu5g01264 343 SUPERFAMILY Cysteine proteinases 31 342 IPR038765 -
Vimu5g01264 343 CDD Peptidase_C1A 126 341 IPR039417 -
Vimu5g01264 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01264 Vimu-Chr5 22670886 22672001 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01264 - K16292 gmx:102666929 614.379