Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01172 ATGAGTTCATTTAGCCAAAACCACTATGTTTTAGTCCTGTTCCTTGTTCTCACTGTGTGGACATCCCACATAATGTCTCGCAGGTTGTTTGAGGCCTGCACTTCTGAGAGACATGAGAACTGGATGGCACAGTATGGTAAGGTTTACAAGGATGCTGCTGAGAAGAAAAAACGTTTCCAAATATTCAAAAACAATGTGCACTTCATTGAGTCATTCAATACTGCTGGGGACAAACCCTTCAACCTTAGCATTAACCAATTTGCTGACCTTCATGATGAGGAATTTAAGGCTTTACTAACTAATGGTAACAAGAAGGTACGTAGCGTGGTGGGGACAGCTACAGAAACAGAAACATCGTTTAAATATAACAGGGTAACTAAGCTTCTTGCTACAATGGACTGGAGGAAAAGAGGTGCTGTTACTCCAATCAAGGACCAACGCAGATGTGGAAGTTGCTGGGCATTTTCAGCTGTGGCTGCGATAGAGGGTATCCACCAAATTACTACAAGTAAATTGGTGTCTCTCTCAGAGCAAGAACTGGTAGATTGTGTGAAAGGTGAGAGCGAAGGATGCAATGGTGGTTATATGGAAGATGCCTTTGAATTTGTGGCCAAGAAAGGTGGAATAGCAAGTGAATCATACTATCCTTACAAAGGAAAAGATAAAAGTTGTAAGGTTAAGAAGGAGACTCATGGTGTATCTCAGATTAAAGGGTATGAAAAAGTTCCTTCTAATAGCGAAAAGGCACTCCAAAAAGCTGTGGCACATCAACCAGTGTCAGTTTATGTGGAAGCTGGAGGAAATGCTTTCCAATTTTACTCAAGTGGGATTTTTACAGGAAAGTGTGGAACTAATACAGATCATGCTATTACCGTAGTTGGTTATGGAAAATCTCGTGGTGGTACCAAGTATTGGCTGGTGAAAAATTCATGGGGCGCTGGATGGGGTGAGAAAGGGTATATAAGGATGAAGAGAGATATACGTGCCAAGGAAGGTTTATGTGGAATTGCTATGAATGCTTTTTATCCAACTGCTTGA 1038 0.4133 MSSFSQNHYVLVLFLVLTVWTSHIMSRRLFEACTSERHENWMAQYGKVYKDAAEKKKRFQIFKNNVHFIESFNTAGDKPFNLSINQFADLHDEEFKALLTNGNKKVRSVVGTATETETSFKYNRVTKLLATMDWRKRGAVTPIKDQRRCGSCWAFSAVAAIEGIHQITTSKLVSLSEQELVDCVKGESEGCNGGYMEDAFEFVAKKGGIASESYYPYKGKDKSCKVKKETHGVSQIKGYEKVPSNSEKALQKAVAHQPVSVYVEAGGNAFQFYSSGIFTGKCGTNTDHAITVVGYGKSRGGTKYWLVKNSWGAGWGEKGYIRMKRDIRAKEGLCGIAMNAFYPTA 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01172 345 SUPERFAMILY Cysteine proteinases 34 344 IPR038765 -
Gma12g01172 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Gma12g01172 345 SMART Inhibitor_I29_2 38 95 IPR013201 -
Gma12g01172 345 PANTHER SENESCENCE-ASSOCIATED GENE 12 26 344 - -
Gma12g01172 345 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Gma12g01172 345 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Gma12g01172 345 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Gma12g01172 345 Pfam Papain family cysteine protease 131 344 IPR000668 GO:0006508|GO:0008234
Gma12g01172 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Gma12g01172 345 Gene3D Cysteine proteinases 20 345 - -
Gma12g01172 345 CDD Peptidase_C1A 133 343 IPR039417 -
Gma12g01172 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Gma12g01172 345 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Gma12g01172 345 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 26 344 - -
Gma12g01172 345 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01172 Gma-Chr12 14938813 14940155 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01172 - K16292 gmx:100814159 699.508