Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01392 ATGGGACTCTGGGGTTTCCAAGTCTCATGTCGCACTCTCCAAGATGTCTCCATGTATGAGAGGCATGAACAATGGATGACTCGTTATGGCAGAGCGTACAAGGACCCTGAGGAAAAGGAAACGCGTTTCAGGATATTCATGGAAAATGTGAATTACATTGAGGCCTTCAACAATGCTGCGAATAAACCTTACCAGCTAGGCACTAATCAATTTGCAGACCTCACCAACGAGGAGTTCGTAGCACGCAGAAATAGGTTCAAGGGGCACATGTGTTCCTCAGTCACAAAGACAACAACTTTTAAGTATGAAAATGTGACTGCAATACCGTCCACAGTGGACTGGAGGCAAAAGGGTGCAGTGACACCCGTGAAGGACCAAGGTCAATGTGATGTCTCCATGTACGAGAGGCATCAACAGTGGATGGATCAACATGGCAGAGTGTACAAGGACGCTCAGGAAAGGGACAAGCGTTTCAGGATATTCAAGGAAAATGTGAATTACATCGAAGCCTTCAACAATGCTGCCAATCAACCTTACAAGCTTGCCATTAATCAATTTGCAGACCTCACCAACCAGGAGTTCATAGCTCCAAGAAACAGATTCAAGGGGCACGTGTGCTCCTCAATCATAAGAACAACCACTTTTAAGTATGAAAATGTGACTGCAGTACCATCCACTGTGGACTGGAGGCAAAAGGGTGCAGTGACACCCATCAAGGACCAAGGCCAGTGTGGATGCTGCTGGGCGTTTTCTGCTGTTGCAGCAACCGAAGGAATTCACAGACTGAGTACTGGAAAATTGATCTCTTTATCTGAACAAGAACTTGTTGATTGTGACATAAAGGGGGTGGACCAAGGTTGTGAAGGTGGTCTTATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGACTCAACACTGAAGCCAATTACCCCTATAAGGGTGTTGATGGAAAGTGCAATGCAAATGGAGCAGCCAACCATGCTGCTACCATTACTGGGTTTGAGGATGTCCCTGCAAACAATGAGAAGGCACTTCAAAAAGCTGTGGCCAATCAACCAGTTTCTGTAGCCATTGATGCCAGTGGCTCTGACTTTCAATTTTACAAGAGTGGTGTCTTCACTGGTTCATGTGGAACTGAGTTGGATCACGGTGTCACTGCTGTGGGATATGGAGTTAGTGATGATGGAAGTGAGTATTGGTTGGTAAAGAACTCATGGGGAACAGAGTGGGGTGAAGAAGGCTACATTAGGATGAAAAGGGGCGTGGGTGCAGCTGAAGGACTGTGTGGCATTGCTATGCAAGCATCTTACCCAATTGCTTGA 1326 0.4593 MGLWGFQVSCRTLQDVSMYERHEQWMTRYGRAYKDPEEKETRFRIFMENVNYIEAFNNAANKPYQLGTNQFADLTNEEFVARRNRFKGHMCSSVTKTTTFKYENVTAIPSTVDWRQKGAVTPVKDQGQCDVSMYERHQQWMDQHGRVYKDAQERDKRFRIFKENVNYIEAFNNAANQPYKLAINQFADLTNQEFIAPRNRFKGHVCSSIIRTTTFKYENVTAVPSTVDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGIHRLSTGKLISLSEQELVDCDIKGVDQGCEGGLMDDAFKFIIQNHGLNTEANYPYKGVDGKCNANGAANHAATITGFEDVPANNEKALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSDDGSEYWLVKNSWGTEWGEEGYIRMKRGVGAAEGLCGIAMQASYPIA* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01392 441 Pfam Papain family cysteine protease 223 440 IPR000668 GO:0006508|GO:0008234
Lapu11g01392 441 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 382 392 IPR025660 -
Lapu11g01392 441 SUPERFAMILY Cysteine proteinases 132 440 IPR038765 -
Lapu11g01392 441 SMART Inhibitor_I29_2 22 79 IPR013201 -
Lapu11g01392 441 SMART Inhibitor_I29_2 137 194 IPR013201 -
Lapu11g01392 441 SUPERFAMILY Cysteine proteinases 15 130 IPR038765 -
Lapu11g01392 441 CDD Peptidase_C1A 224 439 IPR039417 -
Lapu11g01392 441 Pfam Cathepsin propeptide inhibitor domain (I29) 137 194 IPR013201 -
Lapu11g01392 441 Pfam Cathepsin propeptide inhibitor domain (I29) 22 79 IPR013201 -
Lapu11g01392 441 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 400 419 IPR025661 -
Lapu11g01392 441 SMART pept_c1 223 440 IPR000668 GO:0006508|GO:0008234
Lapu11g01392 441 FunFam Senescence-specific cysteine protease SAG39 130 441 - -
Lapu11g01392 441 PRINTS Papain cysteine protease (C1) family signature 400 406 IPR000668 GO:0006508|GO:0008234
Lapu11g01392 441 PRINTS Papain cysteine protease (C1) family signature 241 256 IPR000668 GO:0006508|GO:0008234
Lapu11g01392 441 PRINTS Papain cysteine protease (C1) family signature 384 394 IPR000668 GO:0006508|GO:0008234
Lapu11g01392 441 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 241 252 IPR000169 -
Lapu11g01392 441 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 10 129 IPR013128 GO:0008234
Lapu11g01392 441 Gene3D Cysteine proteinases 132 441 - -
Lapu11g01392 441 Gene3D Cysteine proteinases 8 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01392 Lapu-Chr11 16236333 16253290 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01392 - K16292 gmx:102666929 602.438