Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01262 ATGTGCAAAGTCTTTGCAGCAGCTTCTTTAGTACGTTGCAAGTCTTTGGTTGCAAAGACTTTGGTTGCAGCAGCAGCAGAGAAAGAAAGTTGTGTGAGTGTGTGGGTAGAGAGGGAGAATCACGGGAAAAATTGGTGTAGTATGCACCACCGTGAAGAGAGAAAAAATAGAGAGAGGGCTTGTGTTGTGTGTTGTGAGTGTATCTTTAAGAGTCTAAGAGTGTTGTGTTTGTGTACTCCTATACCAACAGAAGTCCCAAAGGGCTATCTTGCAGTGTATGTTGGAGAGAAACAAAAGCGGTTTGTGATTCCCATATCATACTTGAACCAATCTTCATTTCAACACTTGTTAAGTCAATTTGAAGAAGAGTTTGGATACAATCATCCCATGGGTGGCCTTACGATTCCTTGCCGTGAAGATGTCTTCCAACGTATAGTTTCTTGCTTGAATTGA 453 0.4172 MCKVFAAASLVRCKSLVAKTLVAAAAEKESCVSVWVERENHGKNWCSMHHREERKNRERACVVCCECIFKSLRVLCLCTPIPTEVPKGYLAVYVGEKQKRFVIPISYLNQSSFQHLLSQFEEEFGYNHPMGGLTIPCREDVFQRIVSCLN 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01262 150 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 83 148 IPR003676 GO:0009733
Vimu5g01262 150 Pfam Auxin responsive protein 69 149 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01262 Vimu-Chr5 22660674 22661252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01262 82 149 Calmodulin-binding Proteins AT3G43120 50.000 9.98e-20 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01262 K14488 - gmx:100780289 122.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01262 5 22660674 22661252 Vimu5g01262 5 22660674 22661252 ECH