Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1348 . . . Aed5g0943 Aev04g2377 . . . . . . . Arst3g02012 . . . Car06g01949 . . . . . . . . . . . . . . . . . . . . . Lja3g2979 . . . . . . Phco9g01493 . . . . . . . . . . . . . . Vimu5g01245 . Vivi5g03406 .
Pvu11g1349 Acco08g0830 Accr13g00811 . Aed5g0942 . . . . Alju10g0834 . . . Arst3g02002 . Bisa02g3161 . . . . . Enph8g0520 Glsi04g0886 . . . . . Lal2g0513 . Lan7g0530 . . . . Lele29g0628 Lele30g0770 Lele31g0914 Lele32g0612 . . . . Mibi07g0805 . . Phco9g01496 Prci6g0977 . . . . . . . Sto4g0061 . . . . . Vimu5g01247 . Vivi5g03405 .
Pvu11g1350 . . . Aed5g0941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2982 . . . . . . Phco9g01497 . . . . . . . . . . . . . . Vimu5g01248 . Vivi5g03404 .
Pvu11g1351 . . Adu03g01520 . Aev04g2365 . Ahy13g1656 . . . . . . . . . Car06g01947 . . Dod03g2010 . . . . . . . . . . . . . . . . . . Lja3g2984 . . . . . . . . Psa7g3794 . . . . . . . . . . . . . . Vivi5g03403 .
Pvu11g1352 . Accr13g00810 Adu03g01521 Aed5g0940 . . Ahy13g1658 . Alju10g0833 Amo13g2118 . . Arst3g01996 . Bisa02g3165 . . . Dere07g0244 Dod03g2007 Enph8g0523 Glsi04g0885 . . . . . Lal2g0512 . Lan7g0529 . . . . Lele29g0625 Lele30g0772 Lele31g0917 Lele32g0610 Lja3g2985 . . . Mibi07g0803 . . Phco9g01498 Prci6g0976 Psa7g3793 . . . . . . Sto4g0062 . . . . . . . . .
Pvu11g1353 . . . . . . . . . . . . . . . . . . . . . . Gma12g01125 . Gso12g1035 . . Lal2g0500 . . . . . Lasa7g02647 . . . . . . . . . . . . . . . . . . Spst11g00880 Ssu3g2073 . . . . . . . . . .
Pvu11g1354 . . . . . . . . . . . Apr3g0961 . . . . . . . . . . Gma12g01126 . Gso12g1036 . . . . . . . . . . . . . . . . . . . . Phco9g01500 . . . . . . Spst11g00876 . . . . . . . . . . .
Pvu11g1355 . . . . . . . . . . . . . . . . . . . . . . Gma12g01136 . . . . . . . . . . Lasa7g02649 . . . . . . . Mesa13g02281 . Mtr4g2511 Phac11g01805 . . Psa7g3792 . . . . Spst11g00873 Ssu3g2053 . . . Tsu02g02987 . . Vimu5g01256 . Vivi5g03401 .
Pvu11g1356 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1357 . . . . . . . . . . Amo03g0390 Apr3g0960 . . . . . . . . . . . . Gso12g1038 . . . . Lan7g0515 . . . Lasa7g02657 . . . . . . Mepo2g02778 . . Mtr4g2512 . Phco9g01501 . . . . . . Spst11g00872 . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lja Lja3g2979 Chr3 54781015 54781578 -
Vivi Vivi5g03406 Chr5 125680379 125682722 +
Pvu Pvu11g1348 Chr11 29132470 29135811 -
Aed Aed5g0943 Chr5 7329255 7331959 +
Aev Aev04g2377 Chr04 23062191 23062742 +
Arst Arst3g02012 Chr3 24331225 24335814 +
Car Car06g01949 Chr06 19494165 19498990 -
Lja Lja3g2979 Chr3 54781015 54781578 -
Phco Phco9g01493 Chr9 34944205 34944756 -
Vimu Vimu5g01245 Chr5 22107573 22108133 -
Vivi Vivi5g03406 Chr5 125680379 125682722 +
Pvu Pvu11g1349 Chr11 29337245 29344086 +
Acco Acco08g0830 Chr08 7434762 7438562 +
Accr Accr13g00811 Chr13 9036504 9040285 -
Aed Aed5g0942 Chr5 7286450 7294280 -
Alju Alju10g0834 Chr10 7347281 7351227 -
Arst Arst3g02002 Chr3 24188666 24194989 -
Bisa Bisa02g3161 Chr02 80010045 80016050 +
Enph Enph8g0520 Chr8 13981292 13986589 +
Glsi Glsi04g0886 Chr04 6474010 6480353 -
Lal Lal2g0513 Chr2 3065401 3072184 -
Lan Lan7g0530 Chr7 3868376 3876007 -
Lele Lele29g0628 Chr29 3823378 3837244 -
Lele Lele30g0770 Chr30 12084090 12089488 +
Lele Lele31g0914 Chr31 16561967 16567687 +
Lele Lele32g0612 Chr32 3772810 3778581 -
Mibi Mibi07g0805 Chr07 9912268 9918207 -
Phco Phco9g01496 Chr9 35076092 35082136 +
Prci Prci6g0977 Chr6 6742562 6743608 -
Sto Sto4g0061 Chr4 517208 523520 +
Vimu Vimu5g01247 Chr5 22274547 22280508 +
Vivi Vivi5g03405 Chr5 125659973 125666422 -
Pvu Pvu11g1350 Chr11 29463003 29467739 -
Aed Aed5g0941 Chr5 7279278 7283761 +
Lja Lja3g2982 Chr3 54901034 54908047 -
Phco Phco9g01497 Chr9 35102709 35106815 -
Vimu Vimu5g01248 Chr5 22297602 22301487 -
Vivi Vivi5g03404 Chr5 125655909 125659396 +
Pvu Pvu11g1351 Chr11 29468276 29469378 -
Adu Adu03g01520 Chr03 23755780 23756235 +
Aev Aev04g2365 Chr04 22896849 22897331 +
Ahy Ahy13g1656 Chr13 24825482 24826234 +
Car Car06g01947 Chr06 19466289 19467105 +
Dod Dod03g2010 Chr03 46411790 46412194 -
Lja Lja3g2984 Chr3 55097328 55097783 -
Psa Psa7g3794 Chr7 318013671 318014129 -
Vivi Vivi5g03403 Chr5 125651701 125652141 +
Pvu Pvu11g1352 Chr11 29488035 29489083 -
Accr Accr13g00810 Chr13 9034578 9035018 -
Adu Adu03g01521 Chr03 23794714 23795195 +
Aed Aed5g0940 Chr5 7276580 7277029 +
Ahy Ahy13g1658 Chr13 24891186 24892379 +
Alju Alju10g0833 Chr10 7344960 7345502 -
Amo Amo13g2118 Chr13 33999159 34000225 +
Arst Arst3g01996 Chr3 24114231 24115520 +
Bisa Bisa02g3165 Chr02 80144801 80145265 -
Dere Dere07g0244 Chr07 4807225 4808836 -
Dod Dod03g2007 Chr03 46328892 46330201 -
Enph Enph8g0523 Chr8 13992202 13993050 -
Glsi Glsi04g0885 Chr04 6470653 6473877 +
Lal Lal2g0512 Chr2 3062546 3062974 +
Lan Lan7g0529 Chr7 3862738 3863493 +
Lele Lele29g0625 Chr29 3815191 3815631 +
Lele Lele30g0772 Chr30 12094916 12095422 -
Lele Lele31g0917 Chr31 16580289 16580738 -
Lele Lele32g0610 Chr32 3766505 3766942 +
Lja Lja3g2985 Chr3 55180878 55181697 -
Mibi Mibi07g0803 Chr07 9902573 9903010 +
Phco Phco9g01498 Chr9 35108047 35108475 -
Prci Prci6g0976 Chr6 6723193 6723939 +
Psa Psa7g3793 Chr7 318012050 318013077 -
Sto Sto4g0062 Chr4 527411 527854 -
Pvu Pvu11g1353 Chr11 29515405 29516516 -
Gma Gma12g01125 Chr12 13821098 13822205 -
Gso Gso12g1035 Chr12 13592965 13594348 -
Lal Lal2g0500 Chr2 3004938 3006255 -
Lasa Lasa7g02647 Chr7 537444364 537445455 -
Spst Spst11g00880 Chr11 32808455 32809559 -
Ssu Ssu3g2073 Chr3 68356445 68357818 +
Pvu Pvu11g1354 Chr11 29517540 29518649 +
Apr Apr3g0961 Chr3 24517956 24519309 -
Gma Gma12g01126 Chr12 13825553 13826657 +
Gso Gso12g1036 Chr12 13597417 13598744 +
Phco Phco9g01500 Chr9 35145577 35146688 -
Spst Spst11g00876 Chr11 32796956 32798068 +
Pvu Pvu11g1355 Chr11 29563493 29564505 -
Gma Gma12g01136 Chr12 14135552 14136513 +
Lasa Lasa7g02649 Chr7 537595525 537596388 +
Mesa Mesa13g02281 Chr13 26648249 26649114 +
Mtr Mtr4g2511 Chr4 38673388 38674619 -
Phac Phac11g01805 Chr11 24073502 24074723 -
Psa Psa7g3792 Chr7 317979947 317981302 -
Spst Spst11g00873 Chr11 32791707 32792794 +
Ssu Ssu3g2053 Chr3 67774170 67775178 -
Tsu Tsu02g02987 Chr02 32935964 32936798 +
Vimu Vimu5g01256 Chr5 22577998 22578946 -
Vivi Vivi5g03401 Chr5 125636210 125637186 +
Pvu Pvu11g1356 Chr11 29567452 29570410 -
Pvu Pvu11g1357 Chr11 29571753 29572871 -
Amo Amo03g0390 Chr03 7265208 7267021 +
Apr Apr3g0960 Chr3 24514878 24516245 +
Gso Gso12g1038 Chr12 13653068 13654393 +
Lan Lan7g0515 Chr7 3789458 3791195 -
Lasa Lasa7g02657 Chr7 538162808 538163899 -
Mepo Mepo2g02778 Chr2 37530975 37532463 -
Mtr Mtr4g2512 Chr4 38675562 38676947 -
Phco Phco9g01501 Chr9 35147719 35148828 +
Spst Spst11g00872 Chr11 32784662 32785111 -