Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0139 Acco07g1797 Accr6g01537 Adu02g01707 . Aev02g1657 Ahy12g1750 Ahy2g1496 Aip02g01983 Alju05g0377 . Amo02g2130 . Arst2g02221 . Bisa06g0491 Bva02g01329 Car06g02701 . Dere11g0426 Dod07g1344 Enph10g0923 Glsi07g1768 . . . . . . . . . . . Lasa7g00576 . . . . . Mal7g0652 Mepo2g00677 . Mibi04g1795 Mtr4g0630 . Phco1g01577 Prci12g0389 . . . . . Spst4g01446 . Sto1g2415 . Trre7g00657 . . . . . Vivi5g01166 Vra9g1031
Pvu10g0140 . . . . . . . . . . . . . . . . . . . . . . . . Gso1g0986 Gso3g0583 . . . . . . . Lasa7g00434 . . . . Lja3g4453 . . . . . . Phco1g01582 . Psa7g5600 Pste6g00209 . . . Spst4g01447 . . . . . . . . . . .
Pvu10g0141 . . . . . . . . . . . . . . . . . . . . . . . . Gso1g0988 . . . . . . . . Lasa7g00431 . . . . . . . . . . . Phco1g01589 . Psa7g5589 . . . . . . . . . Tsu06g00549 . . . . . .
Pvu10g0142 Acco07g1780 Accr6g01510 Adu02g01685 . Aev02g1643 Ahy12g1724 Ahy2g1475 Aip02g01951 Alju05g0398 . Amo02g2111 . Arst2g02184 Bach6g01128 Bisa06g0521 Bva02g01310 Car06g02706 Cca01g01291 Dere11g0438 Dod07g1326 Enph10g0937 Glsi07g1759 . . . . Lal14g0037 . . Lan12g0011 . . . Lasa7g00583 Lele37g1153 . Lele39g0260 . . Mal7g0667 Mepo2g00695 Mesa13g04770 Mibi04g1775 Mtr4g0641 . Phco1g01591 . . . Pumo7g01153 . Seca4g10544 Spst4g01451 Ssu4g2137 Sto1g2426 . . . Vian9g01234 . Vimu9g01315 Viun10g00801 Vivi5g01156 .
Pvu10g0143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00584 . . . . . . . . . . . . . . Pste6g00242 . . . Spst4g01452 . . . . . . . Vimu9g01314 . . .
Pvu10g0145 . . . . . . . . . . . Apr10g0404 . . . Bva02g01292 . . . . . . . Gma16g00847 Gso16g0755 . . . . . . . . . . . . . . . . . . Mtr8g0404 . Phco1g01598 . . . . . . Spst4g01453 . . . . . . . . . . .
Pvu10g0146 . . Adu02g01658 . Aev02g1616 Ahy12g1692 Ahy2g1450 Aip02g01914 . . Amo02g2063 Apr10g0402 Arst2g02144 . . Bva02g01289 . Cca01g01290 . Dod07g1292 . . Gma03g00719 . . Gso3g0707 Lal14g0049 . . Lan12g0018 . . . . . . . . . . . . . . . . . Psa7g5579 . Pumo7g01147 . Seca4g10529 Spst4g01454 Ssu2g0513 . . . . . . Vimu9g01312 Viun10g00797 . .
Pvu10g0147 . . Adu02g01650 . Aev02g1615 Ahy12g1687 Ahy2g1444 Aip02g01902 . . . . Arst2g02134 Bach6g01146 . Bva02g01287 . . . Dod07g1290 . . . . . . . . . . . . . . . . . . . Mal7g0679 . . . . . Phco1g01600 . . . . . . . . . . . Tsu08g00345 . . . . . .
Pvu10g0148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0514 . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0139 Chr10 2139058 2140753 -
Acco Acco07g1797 Chr07 34831457 34832842 +
Accr Accr6g01537 Chr6 47900799 47902192 +
Adu Adu02g01707 Chr02 73046090 73047794 +
Aev Aev02g1657 Chr02 18205286 18206691 +
Ahy Ahy12g1750 Chr12 94704755 94706754 +
Ahy Ahy2g1496 Chr2 79591475 79593584 +
Aip Aip02g01983 Chr02 85806150 85807864 +
Alju Alju05g0377 Chr05 5914080 5915458 -
Amo Amo02g2130 Chr02 70126847 70128602 +
Arst Arst2g02221 Chr2 72466863 72468867 +
Bisa Bisa06g0491 Chr06 12387670 12388967 -
Bva Bva02g01329 Chr02 17088344 17090090 -
Car Car06g02701 Chr06 35772313 35774043 +
Dere Dere11g0426 Chr11 7101763 7103049 -
Dod Dod07g1344 Chr07 36557279 36558916 +
Enph Enph10g0923 Chr10 11760271 11762184 -
Glsi Glsi07g1768 Chr07 59067228 59068493 +
Lasa Lasa7g00576 Chr7 23277370 23278775 +
Mal Mal7g0652 Chr7 17480343 17481672 +
Mepo Mepo2g00677 Chr2 8158073 8159741 +
Mibi Mibi04g1795 Chr04 47483829 47485353 +
Mtr Mtr4g0630 Chr4 7957914 7959791 +
Phco Phco1g01577 Chr1 53175391 53176823 -
Prci Prci12g0389 Chr12 3430844 3432581 -
Spst Spst4g01446 Chr4 52823979 52825573 -
Sto Sto1g2415 Chr1 31860558 31861927 -
Trre Trre7g00657 Chr7 4244238 4245583 +
Vivi Vivi5g01166 Chr5 29238391 29240224 -
Vra Vra9g1031 Chr9 13000770 13002205 -
Pvu Pvu10g0140 Chr10 2148432 2151749 +
Gso Gso1g0986 Chr1 40266400 40270199 +
Gso Gso3g0583 Chr3 15901328 15904945 +
Lasa Lasa7g00434 Chr7 14172590 14175982 -
Lja Lja3g4453 Chr3 86048674 86050767 +
Phco Phco1g01582 Chr1 53251275 53254598 +
Psa Psa7g5600 Chr7 477604071 477607320 -
Pste Pste6g00209 Chr6 685125 694795 -
Spst Spst4g01447 Chr4 52838507 52841818 +
Pvu Pvu10g0141 Chr10 2159672 2163466 -
Gso Gso1g0988 Chr1 40398086 40402308 -
Lasa Lasa7g00431 Chr7 13925677 13929012 +
Phco Phco1g01589 Chr1 53370871 53374194 +
Psa Psa7g5589 Chr7 476798317 476799889 -
Tsu Tsu06g00549 Chr06 4699562 4701955 +
Pvu Pvu10g0142 Chr10 2189340 2223559 -
Acco Acco07g1780 Chr07 34565290 34579606 +
Accr Accr6g01510 Chr6 47020741 47036326 +
Adu Adu02g01685 Chr02 71768116 71782178 +
Aev Aev02g1643 Chr02 18060890 18074979 +
Ahy Ahy12g1724 Chr12 93436102 93449409 +
Ahy Ahy2g1475 Chr2 78273359 78287843 +
Aip Aip02g01951 Chr02 84576024 84588945 +
Alju Alju05g0398 Chr05 6214202 6228359 -
Amo Amo02g2111 Chr02 69518975 69533572 +
Arst Arst2g02184 Chr2 71188941 71202765 +
Bach Bach6g01128 Chr6 9558117 9571671 +
Bisa Bisa06g0521 Chr06 13660693 13663640 -
Bva Bva02g01310 Chr02 16961012 16971943 -
Car Car06g02706 Chr06 35958614 35981994 -
Cca Cca01g01291 Chr01 23312572 23344306 -
Dere Dere11g0438 Chr11 7263212 7289723 -
Dod Dod07g1326 Chr07 35730356 35758786 +
Enph Enph10g0937 Chr10 11856359 11869429 -
Glsi Glsi07g1759 Chr07 58812124 58829497 +
Lal Lal14g0037 Chr14 512369 528022 -
Lan Lan12g0011 Chr12 91136 101970 -
Lasa Lasa7g00583 Chr7 23870746 23890025 -
Lele Lele37g1153 Chr37 21062189 21071135 +
Lele Lele39g0260 Chr39 1758064 1764695 -
Mal Mal7g0667 Chr7 17841000 17858124 -
Mepo Mepo2g00695 Chr2 8318609 8330529 -
Mesa Mesa13g04770 Chr13 75748895 75759996 +
Mibi Mibi04g1775 Chr04 47153546 47164511 +
Mtr Mtr4g0641 Chr4 8066188 8077069 -
Phco Phco1g01591 Chr1 53412998 53457667 -
Pumo Pumo7g01153 Chr7 25653877 25681453 +
Seca Seca4g10544 Chr4 241469926 241482587 +
Spst Spst4g01451 Chr4 52881197 52902498 -
Ssu Ssu4g2137 Chr4 46459005 46524691 -
Sto Sto1g2426 Chr1 31932971 31941935 -
Vian Vian9g01234 Chr9 26082432 26128418 +
Vimu Vimu9g01315 Chr9 21304539 21317317 +
Viun Viun10g00801 Chr10 9135562 9160329 +
Vivi Vivi5g01156 Chr5 28917032 28926511 +
Pvu Pvu10g0143 Chr10 2195687 2196814 -
Pvu Pvu10g0144 Chr10 2230057 2237858 +
Lasa Lasa7g00584 Chr7 23963901 23965663 +
Pste Pste6g00242 Chr6 820175 822789 -
Spst Spst4g01452 Chr4 52910910 52916303 +
Vimu Vimu9g01314 Chr9 21298779 21299366 -
Pvu Pvu10g0145 Chr10 2256682 2258375 +
Apr Apr10g0404 Chr10 9969896 9971212 +
Bva Bva02g01292 Chr02 16878765 16880219 +
Gma Gma16g00847 Chr16 15272578 15276720 +
Gso Gso16g0755 Chr16 14800113 14804294 +
Mtr Mtr8g0404 Chr8 4584396 4590801 +
Phco Phco1g01598 Chr1 53574012 53574659 -
Spst Spst4g01453 Chr4 52936951 52938973 +
Pvu Pvu10g0146 Chr10 2262907 2269486 -
Adu Adu02g01658 Chr02 70298744 70301155 -
Aev Aev02g1616 Chr02 17807712 17810442 +
Ahy Ahy12g1692 Chr12 92138336 92140818 -
Ahy Ahy2g1450 Chr2 76864054 76866446 -
Aip Aip02g01914 Chr02 83337840 83340357 -
Amo Amo02g2063 Chr02 67573711 67576151 -
Apr Apr10g0402 Chr10 9943902 9946601 -
Arst Arst2g02144 Chr2 69720825 69723180 -
Bva Bva02g01289 Chr02 16863066 16865653 -
Cca Cca01g01290 Chr01 23279006 23283072 +
Dod Dod07g1292 Chr07 34497645 34501399 +
Gma Gma03g00719 Chr03 23884336 23897243 -
Gso Gso3g0707 Chr3 22413949 22427083 -
Lal Lal14g0049 Chr14 667761 678291 -
Lan Lan12g0018 Chr12 168956 173719 -
Psa Psa7g5579 Chr7 476026369 476028153 -
Pumo Pumo7g01147 Chr7 24994856 24998880 -
Seca Seca4g10529 Chr4 241208397 241211410 -
Spst Spst4g01454 Chr4 52943837 52946547 +
Ssu Ssu2g0513 Chr2 29914044 29918321 +
Vimu Vimu9g01312 Chr9 21277776 21278951 +
Viun Viun10g00797 Chr10 9065508 9071072 +
Pvu Pvu10g0147 Chr10 2274245 2275869 -
Adu Adu02g01650 Chr02 69824437 69825773 -
Aev Aev02g1615 Chr02 17800263 17801585 -
Ahy Ahy12g1687 Chr12 91660787 91662151 -
Ahy Ahy2g1444 Chr2 76501608 76502945 -
Aip Aip02g01902 Chr02 82877027 82878313 -
Arst Arst2g02134 Chr2 69246577 69247782 -
Bach Bach6g01146 Chr6 9692350 9693807 -
Bva Bva02g01287 Chr02 16851758 16853571 +
Dod Dod07g1290 Chr07 34475802 34476644 -
Mal Mal7g0679 Chr7 18394748 18396070 -
Phco Phco1g01600 Chr1 53615036 53615737 -
Tsu Tsu08g00345 Chr08 3338581 3342267 -
Pvu Pvu10g0148 Chr10 2284155 2284445 +
Ssu Ssu2g0514 Chr2 30114729 30115313 +