Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4453 ATGAAAAGGAGGGATCTTATAGCAACACTTTTGGAAACTTGCCACTGTGAGAAATCAACATCACAGTTACACTCACTATGTTTAAAACTTGGCCTCACCCATGATAGTTTCATTGTGACAAAGCTCAATGTTCTTTATGGCAAACACGCTTCCATCCACCATGCACATAAGCTGTTTGATGAAACGCCTGACAAGTCTGTCTACCTATGGAACGCTCTGCTTAGGCGATATCGTGCTGAGGGTGAATGGGCAGAGACGTTATCGCTATTCCGGCGAATGCATGCCACTGCGAGACCGGATAGTCACACGGTATCTATCGCGTTGAAGTCGTGTGTGGGTTTGCAGAAGCTTGAGGTGGGGAGGATGATTCATGGATTTCTCAAGAAGGAGAATTTAGATGGTGACATGTTTGTCGGGTCGGCGTTGATTGAGCTGTATTCAAAATGTGGAGAAATGAATGATGCTGTGGAAGTTTTTATGGAGTATCCGAAACCGGATGTGGTTTTGTGGACTTCGATAGTAACGGGTTATGAGCGGAGTGGTACTCCTGAGCTCGCGCTCGCGTTTTTCTCACGAATGGCTGTGTTGGAGGAAGTGAGTCCGGATCCGGTGACACTTGTTAGCGCTGCTTCGGCTTGTGCTCAGTTATCTGATTCGAAGCTTGGAAGAAGTATACATGGTTTTGTAAAAAGATGTGGTTTAGACACACACTTAAGTTTGGCTAATTCATTGCTAAATTTATATGGAAAAACTGGTTCTATCAAGAGTGCAGAAATTTTGTTCAGGGAAATGCCTGATAAGGATGTTATATCTTGGAGCTCAATGCTTGCCTGTTATGCGGATAATGGAGCTGCAACTAATGCATTAGACCTTTTCAATGAAATGATAGATAAGAGAATTGAGCCCAACTGGGTTACTTTGGTTAGTGCATTGAGAGCATGTGCTTCAGCTTCTTATTTGGAAGAAGGTAGGAAGATTCACCAATTAGCTGTCAGTTATGGTTTTGAGCTGGAAACCACTGTCTCTACAGCTCTGATGGACATGTACCTGAAATGCTCCTCACCGGAAAATGCAGTTGATATTTTCAACAGAATTCCGAAAAAGGATGTAGTTGCTTGGGCTGTTCTGTTTGGTGGCTATGCTGAAACTGGCATGGCACACAAGTCAATGGAAGTTTTCTGCAACATGTTATCGGATGGAGTTCGACCTGATGCCGTGGCTCTAGTGAAGATACTCACAGCTATTTCAGAATTGGGGGTTCTTCAGCAAGCTGTATGTCTTCATGCTTTTGTAACTAAAAGTGGATTCGACAATAATGAGTATATTGGTGCATCTCTCATAGAGATGTATGCAAAATGTAGTAGCATAGATAATGCTAACAAGGTTTTCAGAGGAATGGCATATAAAGATGTTGTTATCTGGAGCTCGATAATTGCAGCTTATGGATTCCATGGGCAAGGAGAAGAGGCTTTGAAATTATTTTATCAGATGGCTAACCATTCAGATCTTAAGCCTAACAAAGTAACCTTCATTTCAATTCTATCTGCCTGTAGTCATGCAGGTTTGGTTGAAGAAGGGATAACGATATTTGATATAATGGTGAACAAGTATCAATTGATGCCCGATTCAGAGCATTATGGGATAATGGTTGATCTTCTTGGTCGTATGGGAGAGTTGGATAGGGCCTTGGACATTATTAATAACATGCCCATGCAAGCTGGGCCTCATGTATGGGGAGCCTTACTTGGTGCATGCCATATACATCATAATATAAAGATGGGGGAGGTTGCAGCTAAGAATCTTTTCCCATTGGACCCTAACCATGCAGGGTATTATACACTCTTATCAAATATTTATTGTGTGGACAAGAATTGGCATAATGCTGCAAAACTTAGGTCATTGATTAAGGAGAATAGATTGAAGAAGGTTTTAGGTCAAAGTATGGTTGAGTTAAAGAATGAGGTTCACAGTTTTGTAGCTAGTGATAGATTCCATGATGAATCTGATCAGATTTTTGAAGTTCTGAGAAAATTAGATGTGAAGATGAGAGAAGAATGTTATGAACATCAACTAAAGATAGAGGAAGTCATGTAA 2094 0.4121 MKRRDLIATLLETCHCEKSTSQLHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHKLFDETPDKSVYLWNALLRRYRAEGEWAETLSLFRRMHATARPDSHTVSIALKSCVGLQKLEVGRMIHGFLKKENLDGDMFVGSALIELYSKCGEMNDAVEVFMEYPKPDVVLWTSIVTGYERSGTPELALAFFSRMAVLEEVSPDPVTLVSAASACAQLSDSKLGRSIHGFVKRCGLDTHLSLANSLLNLYGKTGSIKSAEILFREMPDKDVISWSSMLACYADNGAATNALDLFNEMIDKRIEPNWVTLVSALRACASASYLEEGRKIHQLAVSYGFELETTVSTALMDMYLKCSSPENAVDIFNRIPKKDVVAWAVLFGGYAETGMAHKSMEVFCNMLSDGVRPDAVALVKILTAISELGVLQQAVCLHAFVTKSGFDNNEYIGASLIEMYAKCSSIDNANKVFRGMAYKDVVIWSSIIAAYGFHGQGEEALKLFYQMANHSDLKPNKVTFISILSACSHAGLVEEGITIFDIMVNKYQLMPDSEHYGIMVDLLGRMGELDRALDIINNMPMQAGPHVWGALLGACHIHHNIKMGEVAAKNLFPLDPNHAGYYTLLSNIYCVDKNWHNAAKLRSLIKENRLKKVLGQSMVELKNEVHSFVASDRFHDESDQIFEVLRKLDVKMREECYEHQLKIEEVM* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4453 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Lja3g4453 697 TIGRFAM PPR: pentatricopeptide repeat domain 371 405 IPR002885 -
Lja3g4453 697 TIGRFAM PPR: pentatricopeptide repeat domain 270 304 IPR002885 -
Lja3g4453 697 Pfam E motif 588 650 IPR046848 -
Lja3g4453 697 PANTHER OS01G0913400 PROTEIN-RELATED 19 97 - -
Lja3g4453 697 PANTHER OS01G0913400 PROTEIN-RELATED 64 683 - -
Lja3g4453 697 Pfam PPR repeat family 267 315 IPR002885 -
Lja3g4453 697 Pfam PPR repeat family 469 518 IPR002885 -
Lja3g4453 697 PANTHER - 19 97 - -
Lja3g4453 697 PANTHER - 64 683 - -
Lja3g4453 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 505 IPR002885 -
Lja3g4453 697 Gene3D Tetratricopeptide repeat domain 407 520 IPR011990 GO:0005515
Lja3g4453 697 Gene3D Tetratricopeptide repeat domain 2 120 IPR011990 GO:0005515
Lja3g4453 697 Gene3D Tetratricopeptide repeat domain 121 223 IPR011990 GO:0005515
Lja3g4453 697 Gene3D Tetratricopeptide repeat domain 224 330 IPR011990 GO:0005515
Lja3g4453 697 Gene3D Tetratricopeptide repeat domain 521 673 IPR011990 GO:0005515
Lja3g4453 697 Pfam PPR repeat 343 369 IPR002885 -
Lja3g4453 697 Pfam PPR repeat 371 401 IPR002885 -
Lja3g4453 697 Pfam PPR repeat 140 161 IPR002885 -
Lja3g4453 697 Pfam PPR repeat 168 193 IPR002885 -
Lja3g4453 697 Pfam PPR repeat 69 94 IPR002885 -
Lja3g4453 697 Pfam PPR repeat 545 569 IPR002885 -
Lja3g4453 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4453 Lja-Chr3 86048674 86050767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4453 23 687 Glycoside Hydrolase AT3G49170 31.610 1.05e-112 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4453 - - lja:Lj0g3v0269859.1 1211.82