Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0149 . . . . . . . . . . . . . . . Bva02g01285 . . . . . . . . . . Lal14g0050 . . Lan12g0019 . . . . . . . . . . Mepo2g00697 Mesa13g04767 . Mtr4g0644 . . . . . . . . Spst4g01457 . . . Trre7g00669 . . . Vimu9g01310 . . .
Pvu10g0150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01603 . . . . . . . Ssu2g0515 . . . . . . Vimu9g01308 . . .
Pvu10g0151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0152 . . . . . . . . . . . . . . . . . Cca01g01689 . . . . Gma03g00553 . . Gso3g0542 Lal14g0335 . . . . . . . . . . . . . . . . . . Phco1g01604 . Psa7g5404 . Pumo7g01242 Rops4g00018 Seca2g01872 Spst4g01459 Ssu4g2169 . . . . Vian9g01229 . Vimu9g01263 Viun10g00785 . .
Pvu10g0153 . . . Aed2g1367 . . . . . . . . . . . . . Cca01g01693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00552 Pumo7g01264 Rops4g00020 Seca2g01861 Spst4g01462 Ssu4g2176 . . . . Vian9g01228 . Vimu9g01264 Viun10g00783 . .
Pvu10g0154 . . . Aed2g1368 . . . . . . . . . . . . Car06g02720 Cca01g01694 . . . . . . . . Lal14g0323 . . . . . . . . . . . . Mal7g0728 Mepo2g00728 Mesa13g04684 . Mtr4g0688 . Phco1g01610 . . Pste6g00526 Pumo7g01265 Rops4g00024 Seca4g10588 Spst4g01463 Ssu4g2179 . . Trre7g00712 . Vian9g01227 . Vimu9g01265 Viun10g00782 . .
Pvu10g0155 . . . . . . . . . Amo12g2083 . Apr10g0643 . . . . . Cca01g01695 . . . . Gma03g00556 . . Gso3g0547 . . . . Lan1g0846 . . . . . . . Lja3g3213 . . . . . . . . . . Pumo7g01282 . . Spst4g01464 . . . . . Vian9g01225 Vifa2g05248 Vimu9g01267 . . .
Pvu10g0156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01613 . Psa7g5547 . . . . Spst4g01465 Ssu4g2181 . . . Tsu06g00513 . . . . . .
Pvu10g0157 . . . . . . . . . . Amo02g2277 Apr10g0640 . . . . . Cca01g01696 . . . . Gma03g00558 . . Gso3g0554 . . . . . . . Lasa7g00502 . . . . Lja3g3212 . Mepo2g00601 Mesa13g04900 . Mtr4g0552 . . . Psa7g5506 Pste6g00481 Pumo7g01283 . . Spst4g01466 Ssu4g2182 . Tpr4g0847 Trre7g00572 Tsu06g00540 Vian9g01224 . Vimu9g01268 Viun10g00776 Vivi5g00847 .
Pvu10g0158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Ssu Ssu4g2169 Chr4 49748956 49753496 -
Pvu Pvu10g0149 Chr10 2293691 2297331 +
Bva Bva02g01285 Chr02 16822277 16829924 -
Lal Lal14g0050 Chr14 680658 694928 -
Lan Lan12g0019 Chr12 174975 188810 -
Mepo Mepo2g00697 Chr2 8354801 8364550 -
Mesa Mesa13g04767 Chr13 75704813 75712822 +
Mtr Mtr4g0644 Chr4 8113433 8123252 -
Spst Spst4g01457 Chr4 52983667 53000485 +
Trre Trre7g00669 Chr7 4333538 4342757 -
Vimu Vimu9g01310 Chr9 21261261 21268666 -
Pvu Pvu10g0150 Chr10 2305536 2314930 +
Phco Phco1g01603 Chr1 53654271 53675779 +
Ssu Ssu2g0515 Chr2 30216579 30248370 +
Vimu Vimu9g01308 Chr9 21240069 21245613 -
Pvu Pvu10g0151 Chr10 2312125 2312936 +
Pvu Pvu10g0152 Chr10 2338922 2341851 +
Cca Cca01g01689 Chr01 38775258 38778786 -
Gma Gma03g00553 Chr03 12435435 12439263 +
Gso Gso3g0542 Chr3 12678181 12682181 +
Lal Lal14g0335 Chr14 4403048 4407254 -
Phco Phco1g01604 Chr1 53719713 53721531 +
Psa Psa7g5404 Chr7 466138528 466140977 -
Pumo Pumo7g01242 Chr7 29439405 29442319 +
Rops Rops4g00018 Chr4 565803 568905 -
Seca Seca2g01872 Chr2 38580422 38582673 +
Spst Spst4g01459 Chr4 53063142 53064994 +
Ssu Ssu4g2169 Chr4 49748956 49753496 -
Vian Vian9g01229 Chr9 25892620 25894533 -
Vimu Vimu9g01263 Chr9 20558955 20560956 +
Viun Viun10g00785 Chr10 8856193 8859385 -
Pvu Pvu10g0153 Chr10 2354368 2356727 -
Aed Aed2g1367 Chr2 14079835 14082772 -
Cca Cca01g01693 Chr01 39087939 39091374 -
Pste Pste6g00552 Chr6 2051259 2053579 +
Pumo Pumo7g01264 Chr7 29891639 29893725 -
Rops Rops4g00020 Chr4 639082 641998 -
Seca Seca2g01861 Chr2 37346177 37348670 +
Spst Spst4g01462 Chr4 53105627 53107900 -
Ssu Ssu4g2176 Chr4 50058271 50060685 -
Vian Vian9g01228 Chr9 25880455 25882736 +
Vimu Vimu9g01264 Chr9 20573364 20575492 -
Viun Viun10g00783 Chr10 8847563 8850437 +
Pvu Pvu10g0154 Chr10 2364212 2369605 +
Aed Aed2g1368 Chr2 14181199 14188029 +
Car Car06g02720 Chr06 36588988 36592682 -
Cca Cca01g01694 Chr01 39124725 39130692 +
Lal Lal14g0323 Chr14 4151110 4154885 +
Mal Mal7g0728 Chr7 19184814 19192904 -
Mepo Mepo2g00728 Chr2 8724906 8730851 +
Mesa Mesa13g04684 Chr13 74652772 74657561 -
Mtr Mtr4g0688 Chr4 8591392 8597247 +
Phco Phco1g01610 Chr1 53760037 53764622 +
Pste Pste6g00526 Chr6 1960945 1968101 -
Pumo Pumo7g01265 Chr7 29904498 29913678 +
Rops Rops4g00024 Chr4 704779 709750 -
Seca Seca4g10588 Chr4 242155804 242170963 -
Spst Spst4g01463 Chr4 53116453 53129859 +
Ssu Ssu4g2179 Chr4 50102455 50110364 +
Trre Trre7g00712 Chr7 4612485 4616256 +
Vian Vian9g01227 Chr9 25844307 25849469 -
Vimu Vimu9g01265 Chr9 20584394 20589451 +
Viun Viun10g00782 Chr10 8816826 8821572 -
Pvu Pvu10g0155 Chr10 2437128 2443461 -
Amo Amo12g2083 Chr12 97300009 97309003 +
Apr Apr10g0643 Chr10 15184826 15192885 +
Cca Cca01g01695 Chr01 39167414 39178720 -
Gma Gma03g00556 Chr03 14252282 14271858 +
Gso Gso3g0547 Chr3 13237200 13250792 +
Lan Lan1g0846 Chr1 19264275 19271110 +
Lja Lja3g3213 Chr3 62181329 62189702 +
Pumo Pumo7g01282 Chr7 31221359 31229890 -
Spst Spst4g01464 Chr4 53150263 53156852 -
Vian Vian9g01225 Chr9 25782324 25799774 +
Vifa Vifa2g05248 Chr2 1565271146 1565278789 -
Vimu Vimu9g01267 Chr9 20626478 20637362 -
Pvu Pvu10g0156 Chr10 2450777 2451432 -
Phco Phco1g01613 Chr1 53822828 53831355 -
Psa Psa7g5547 Chr7 474814774 474822790 +
Spst Spst4g01465 Chr4 53156898 53159324 -
Ssu Ssu4g2181 Chr4 50274547 50286234 -
Tsu Tsu06g00513 Chr06 4289068 4297078 +
Pvu Pvu10g0157 Chr10 2458351 2464561 +
Amo Amo02g2277 Chr02 74232037 74238877 -
Apr Apr10g0640 Chr10 15037676 15047451 -
Cca Cca01g01696 Chr01 39199192 39205675 +
Gma Gma03g00558 Chr03 15623358 15635117 +
Gso Gso3g0554 Chr3 14293914 14305092 +
Lasa Lasa7g00502 Chr7 18415519 18419480 +
Lja Lja3g3212 Chr3 62142174 62148583 -
Mepo Mepo2g00601 Chr2 7040153 7047124 +
Mesa Mesa13g04900 Chr13 77928806 77936872 -
Mtr Mtr4g0552 Chr4 6897799 6906416 +
Psa Psa7g5506 Chr7 472753872 472759278 -
Pste Pste6g00481 Chr6 1796579 1803198 -
Pumo Pumo7g01283 Chr7 31264648 31274523 +
Spst Spst4g01466 Chr4 53169785 53173616 +
Ssu Ssu4g2182 Chr4 50413583 50425826 +
Tpr Tpr4g0847 Chr4 7954568 7960501 +
Trre Trre7g00572 Chr7 3614627 3620678 +
Tsu Tsu06g00540 Chr06 4557610 4563574 +
Vian Vian9g01224 Chr9 25761782 25774214 -
Vimu Vimu9g01268 Chr9 20650622 20661356 +
Viun Viun10g00776 Chr10 8603485 8614057 -
Vivi Vivi5g00847 Chr5 16206429 16209974 +
Pvu Pvu10g0158 Chr10 2489915 2490125 +
Mepo Mepo2g00728 Chr2 8724906 8730851 +
Mesa Mesa13g04684 Chr13 74652772 74657561 -
Mtr Mtr4g0688 Chr4 8591392 8597247 +
Trre Trre7g00712 Chr7 4612485 4616256 +