Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01589 ATGAGAGGACACATACTTCTCTGCCTTTTTCTTATACCATTTTTCTCAATAAACCATAATGCCAACGTTTTTCCAGCCAATGGCTATTTGCTTGGCAACGAGTGTTCCATGTTACTCCGTTTGAAAAATAACCTCAGATTCAATCCTGCAATATCAAAAAAACTTACTCTTTGGAATCAAGGTGAAGATTGTTGTCAATGGCATGGGGTAACATGCAAAGAAGGTGGTGTTATAGCCCTTGATCTCAGTGAAGAGTCTATCTCAGGAGGACTTCTTAATTCAAGCCTTCTTTTTGGCCTTCAATATCTTCAAAGCTTGAATCTGGCTTTCAATAACTTCAGTTCTGTGATTCCTTCTGAACTATACAAATTGAATAATTTGAGGTATTTGAACTTTTCAAATGCTGGCTTTGAGGGGCAGATTCCGCGTGAGATTTTTCGTCTCAGAAGGTTAGTTACTCTTGACTTGTCTTCTTCATTTTCCTCACCTCACAGCCTGAAACTGGCGAAGCCAAATACAGCAATGTTTTTGCAAAACCTTACAGAAATCACAGAATTATATTTAGATGGTATAGCAATACCTGGCAAAGGACAAGAATGGTATCATGCTTTATCTTCGTTGCACAACTTACGTGTTCTAAGCATGTCATCATGCAATATCTCTGGACCTATTGATGCTTCCCTAGCTAACCTTCTCTCACTCACTGTTCTAAAATTAAGCTACAACAACATCTCTGGCACAGTGCCAGATTCCTTCACAAATTTATCCAATCTAGTTTCACTACAACTCAGAAGTTGTGGCTTGAGTGGTTCTTTTCCGAAAGATATCTTCCAAATACCATCATTAAAGGTCCTTGACATCTCAGACAATGAAGATCTCATGGGTTCTTTGCCAAACTTCAAACCAAGTTGTTCTCTTCGTGACATGAATCTTAGCCAGACAAGTTTCACAGGAATGCTTCCGGGTGCAATTTCTAACTTGAAACATTTATCTACAATTGATCTATCTTCTTGCAAGTTTCATGGAACACTTCCTAGTTCAATGTCAGAACTCACCCAACTAGTTTATCTGGACTTGTCTTCCAATAACTTTTCAGGTCCACTCCCTTCTTTTAATATGTCCAAGAATCTCACATGTTTATCCCTCTTTCGTAATAGTTTAACAGGGGTGTTACCATCTAGTCATTTTGAGGGCCTTCAAAATCTTGCCAACATTGATCTTGGGTTTAACTTTTTCAAAGGAAGTCTTCCCTCATCTCTACTTAAACTTCCATGTTTGCGGGAACTTAAACTTCCCTTTAATCAACTCACTGGTCTCTTGGATGAATTTGTGATGACCTCACCTACACTAGAGATGCTTGATTTGGGTAGTAATAATTTGGAAGGACCAATTCCTTTGTCTATTTTTAGCCTTAGAACACTTCGTGTCATTCAACTCAGTTCAAACAAGTTTAATGGCACAGTAGAATTGGACATGATTCGAAGGTTGAGTAATCTAACTACATTAAACCTCGGGAATAACAATTTGTCAGTTGTTATATACTCTAGATATGATCGTGATCTGTCACCCTTTCCTGTTCTAAGAAATATAATGTTGGCATCTTGTAAGTTGAGAGGAATCCCTAGTTTTTTGAAAACTCAATCAAAGTTACTATTCCTTGACCTTGCTGACAACCAGATTGAAGGAACAATACCTTACTGGATCTGGAAACTTGAATATGTTGTTCACTTGAACCTTTCCAGAAATTTCCTAACAAAATTGGAAGGAAATGTATGGAACTTTAGTTCAAACATTTTGGGTGTTGATCTTAGTTCTAACCGACTACAAGGGCCATTTCCTTTCCTTCCAACGTTTGCAAACTATTTGGACTACTCAAACAATAGATTTAACTCGGTCATTCCAGCGGACATTGGAAATCGTATCCCTTTCATAAGATTCTTGACTCTTTCAAACAACAATTTTCAGGGAAAAATCCCTGAATCCTTTCTCAATGCTTCAAGTCTTCGTCTGCTGGATCTTTCTCGCAATAACTTTGTTGGAACGATTCCTAAGTGTTTTGCTAAGTTGAGTAGCATTCTTCGGGTGTTGAACTTAGGAGGAAACAAACTTGAAGGACATATTCCTGATAATTTGCCAACCTCATGTACTCTAAAGTTATTGGACGTAAATGACAATCTCTTGGAGGGTACAATCCCAACATCCTTAGCTTATTGCCAGCAACTACAAGTCCTGAACCTTCGAAGAAATTCATTAACCGACAAATTTCCTTGTTTCTTTAGTAATATTTCCACCTTACGAATCATGGATTTACGGTTAAACAAACTTCACGGGTCAATTGGTTGCCCAAAAAGCAGTGGTGATTGGGAAATGCTCCATATGGTTGATGTAGCCTCCAATAATTTCAATGGTACAATACCAGGAGCCCTATTGAAGAGTTGGAAAGCAATGATGCGAGACAATGTTAATGTCGGACCAGAATTTGGCCACTTATTCATTGATATCGTTGATCACTATGATCCCAAGAATTATAAGGATTTAGTGTCACTCTTAGACAAAACTATTGCAGCAAAGATAGCTAAACTTGTTACTAACATATCTCGCTCTATTCTTGACCAGGCGTCCTCAGATTTTTATGGAGTTGATTATTCTCGATATCAAAATTCAATTGTTATTACAAATAAAGGTCAACAAATAAAATTGGACAAAATCCAGAGAGCCTTTACTTACGTGGATATGTCAAGCAACAATTTTGAGGGTCCAATACCAAGTGAATTAATGCAGTTCAAGGCAATGCTTGCTCTTAACTTGTCAAATAATGCCCTCTCAGGTCATATCCCGTCATCGATTGAAAATTTGAAGAATCTTGAATCCTTAGACTTGTCAAACAATTCTTTAAATGGAGAAATCCCTGGAGAGCTTGCTAGTCTAAATTTTCTTGCATATCTGAATCTCTCAAACAATCACTTGGTGGGTAAAATTCCGAAGGGCACCCAAGTTCAAACATTTGATGGAGATTCCTTTGAAGGAAATGAAAAGTTATGTGGACCTCCACTGACCCGTAATTGCAGCAATGATGGAATGCCAACACCTGAAACACCTCAATCTCATACTCAGAGTTCAATTGATTGGAATTTATTAAGCGCAGAGTTGGGATTTGTTTTTGGCTTTGGAATTTTCATCCTCCCTCTTCTTTTCTGGAAGAGATGGAGGTTGTGGTATTCCAAACAGGTGGATGAGTTGCTTCACAAGATCATTCCCATGCTTGATTTTGCGTATGAACATCAACGTGGGCAGACATATAGAACTCTAAGGAGGAGGTACTGA 3324 0.3812 MRGHILLCLFLIPFFSINHNANVFPANGYLLGNECSMLLRLKNNLRFNPAISKKLTLWNQGEDCCQWHGVTCKEGGVIALDLSEESISGGLLNSSLLFGLQYLQSLNLAFNNFSSVIPSELYKLNNLRYLNFSNAGFEGQIPREIFRLRRLVTLDLSSSFSSPHSLKLAKPNTAMFLQNLTEITELYLDGIAIPGKGQEWYHALSSLHNLRVLSMSSCNISGPIDASLANLLSLTVLKLSYNNISGTVPDSFTNLSNLVSLQLRSCGLSGSFPKDIFQIPSLKVLDISDNEDLMGSLPNFKPSCSLRDMNLSQTSFTGMLPGAISNLKHLSTIDLSSCKFHGTLPSSMSELTQLVYLDLSSNNFSGPLPSFNMSKNLTCLSLFRNSLTGVLPSSHFEGLQNLANIDLGFNFFKGSLPSSLLKLPCLRELKLPFNQLTGLLDEFVMTSPTLEMLDLGSNNLEGPIPLSIFSLRTLRVIQLSSNKFNGTVELDMIRRLSNLTTLNLGNNNLSVVIYSRYDRDLSPFPVLRNIMLASCKLRGIPSFLKTQSKLLFLDLADNQIEGTIPYWIWKLEYVVHLNLSRNFLTKLEGNVWNFSSNILGVDLSSNRLQGPFPFLPTFANYLDYSNNRFNSVIPADIGNRIPFIRFLTLSNNNFQGKIPESFLNASSLRLLDLSRNNFVGTIPKCFAKLSSILRVLNLGGNKLEGHIPDNLPTSCTLKLLDVNDNLLEGTIPTSLAYCQQLQVLNLRRNSLTDKFPCFFSNISTLRIMDLRLNKLHGSIGCPKSSGDWEMLHMVDVASNNFNGTIPGALLKSWKAMMRDNVNVGPEFGHLFIDIVDHYDPKNYKDLVSLLDKTIAAKIAKLVTNISRSILDQASSDFYGVDYSRYQNSIVITNKGQQIKLDKIQRAFTYVDMSSNNFEGPIPSELMQFKAMLALNLSNNALSGHIPSSIENLKNLESLDLSNNSLNGEIPGELASLNFLAYLNLSNNHLVGKIPKGTQVQTFDGDSFEGNEKLCGPPLTRNCSNDGMPTPETPQSHTQSSIDWNLLSAELGFVFGFGIFILPLLFWKRWRLWYSKQVDELLHKIIPMLDFAYEHQRGQTYRTLRRRY 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01589 1107 SMART LRR_typ_2 423 445 IPR003591 -
Phco1g01589 1107 SMART LRR_typ_2 571 594 IPR003591 -
Phco1g01589 1107 SMART LRR_typ_2 952 976 IPR003591 -
Phco1g01589 1107 SMART LRR_typ_2 351 373 IPR003591 -
Phco1g01589 1107 SMART LRR_typ_2 689 714 IPR003591 -
Phco1g01589 1107 SMART LRR_typ_2 255 279 IPR003591 -
Phco1g01589 1107 SMART LRR_typ_2 231 254 IPR003591 -
Phco1g01589 1107 SMART LRR_typ_2 496 516 IPR003591 -
Phco1g01589 1107 SMART LRR_typ_2 100 124 IPR003591 -
Phco1g01589 1107 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 586 824 - -
Phco1g01589 1107 SUPERFAMILY L domain-like 38 191 - -
Phco1g01589 1107 SUPERFAMILY RNI-like 200 579 - -
Phco1g01589 1107 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 360 1023 IPR046956 -
Phco1g01589 1107 Gene3D Ribonuclease Inhibitor 618 1027 IPR032675 -
Phco1g01589 1107 Gene3D Ribonuclease Inhibitor 338 515 IPR032675 -
Phco1g01589 1107 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Phco1g01589 1107 PRINTS Leucine-rich repeat signature 354 367 - -
Phco1g01589 1107 PRINTS Leucine-rich repeat signature 952 965 - -
Phco1g01589 1107 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 299 391 - -
Phco1g01589 1107 Gene3D Ribonuclease Inhibitor 200 337 IPR032675 -
Phco1g01589 1107 Gene3D Ribonuclease Inhibitor 516 617 IPR032675 -
Phco1g01589 1107 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515
Phco1g01589 1107 Pfam Leucine rich repeat 305 364 IPR001611 GO:0005515
Phco1g01589 1107 Pfam Leucine rich repeat 426 484 IPR001611 GO:0005515
Phco1g01589 1107 Pfam Leucine rich repeat 934 989 IPR001611 GO:0005515
Phco1g01589 1107 Pfam Leucine rich repeat 647 703 IPR001611 GO:0005515
Phco1g01589 1107 SUPERFAMILY L domain-like 620 1005 - -
Phco1g01589 1107 FunFam Tyrosine-sulfated glycopeptide receptor 1 844 1026 - -
Phco1g01589 1107 Gene3D Ribonuclease Inhibitor 31 199 IPR032675 -
Phco1g01589 1107 ProSiteProfiles Leucine-rich repeat profile. 954 977 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01589 Phco-Chr1 53370871 53374194 Dispersed/Proximal