Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5600 ATGAGATCACACATATTCTTTTGGCTTTTCTTTATACCATTCAGCTTAATAAATACCAGCACTTACAATTTTGCGGCGAATGGCTATTGTCTTGATCATGAACATTCCTTGTTACTCCATTTGAAAAACAACCTGATATTCAACCCCATGAAATCTTCAAAGCTAGTTCATTGGAACCAAAGTGATGATGATTGTTGCCAATGGCATGGAGTAACATGCAAAGATGGACATGTTACATCCCTTGATCTTAGCCATGAGTCCGTCTCAGAAGGACTTAATGACTCAAGTGCTCTTTTCAGCCTGCAATATCTGCAGAGTTTGAATTTAGCTTTTAATGACTTTCATTCTATGATTCCTCAAGAGCTGCATCAACTGCAGAATTTGAGGTATCTAAACTTGTCAAATGCTGGCTTTGAAGGACAGGTCCCAACAGAAATTTCTCACCTCACAAAGTTGGTTACTCTTGATTTGTCTTCTTCAATTACCTCAAATCACAGCTTAAAACTTGAGAATCCAAATATAGAGATGCTAGTGGAAAGCCTCACAGATATCACAGAATTGTATCTAGATGGTGTAGCAATATCGTCTAGCGGGGATGAATGGGCTCGTGCTTTATCTTTATTGAAAGGGCTTCGTGTTTTGAGCATGTCTTCATGCAATCTCTCCGGACCGATTGATTCTTCACTAGCTAAGCTCACCCAACTCATTTATATCGACTTATCTTCCAATAATCTCACAGGTCCACTCCCTTCTTTCAATAGGTCTAAGAATCTCACATATATATCCTTCTTTCTCAACCATTTAAGTGGAGAATTACCATCTGACCATTTCGAGGGCCTCAGTAATCTTGTAAGCATCGATTTAGGCTTCAATTCTTTCAACGGGAGCGTGCCCCCGTCGGTGCTTAAGCTCCCATATTTGCGAGAGCTAAAACTTCCCTATAATCAACTCAGTGGTGTTTTGGGTGAGTTTGACAATGCATCTTCATCTGTATTGGAGATACTTGATTTAACCAGTAATAATTTGGAAGGTCCTATTCCTTTGTCTGTCTTTAACCTTAAAACACTTAGTTTCGTTCAACTTTCATACAACAAGTTTAACGGCACGATAAAGTTGGACCTCATTAGAAGGTTAACTAATTTAACTATATTAGGCCTCTCACATAACAATCTTTTTATCGATGTCAATTTCAAATATGATCATGACTTGTCACCCTTTCCCAAGATGAGAATTCTACTGTTGGATTCTTGCAAGATAAGAGAAATTCCTAGTTTCTTGAGAAACCAGTCCACGTTATTATCGATTCACCTATCTGAAAACAAGATCGAAGGACTCATACCTAGTTGGATTTGGCAACTTGATTCTCTCATTACTTTGAATCTTTCCCGGAATAATTTGACAGGTTTGGAGGGAAGTGATTTGAATTTCAGTTCTAACCTTATAATGGGTGATTTTAGTTATAACCAACTCCAAGGACCCATTTCTTTCATTCCAAAGTATGCAATATATTTAGACTACTCAAGCAACAGATTCAGCTCTTTCGTTCCACCCGATATTGGAAACCATCTCCCTTACATACGTATGTTGTTTCTTTCAAACAACAATTTTTCGGGACAAATCCATGAATCTTTTTGTAATGCGTCGACTCTAAACTTGCTAGACCTTTCCCACAATAACTTTGTTGGGACTATTCCAAAGTGTTTCTCAGCACTGAGTAGTAGTCTTAAGATGCTGAATTTAGGTGGAAACAAGCTCCGAGGTCATATTCCTAGTACTATGTTTCAGAATTCATGTGCGTTAAGGTTTTTGAATCTAAACGACAATCTTTTAGGCAGTACTATACCAAAATCCTTGGTCAATTGCCAAGAACTACAAGTACTTAACCTTGGCAGTACTATACCAAAATCCTTGGTCAATTGCCAAGAACTACAAGTACTTAACCTTGGTAAGAATGCATTGACAGGAAAATTTCCATGTTTTTCGAGTAAAATATCCACTTTGAGAGTCATGATTTTAAGGTCAAATAAGTTCCATGGATCTATTGAATGCCCTAAATGCATTGGTGAATGGGAGATGCTTCATATCGCTGATCTAGCCTCTAATAACTTCAGTGGCAAGTTATCAGCTGCACTCTTAAATAGATGGAAAGCAATGATGCGCGATGAAGCTGAGCTCGGTCCAGAATTTGGTCACTTGTTTTTAGATATCGTTGATATCTTTCAGCCTACGCGTTTCAAGGACGTACTACAAAATTTGAACAAACGTCTATCTATGAAAGTGGCTACACTTGTTGCAAATATGCCTCGCTCCATTCTTGACCAGGCATACGTTGATGTGGCTACACTTGTTGCAAATATGCCTCGCTCCATTCTTGACCAGGCATACGTTGATGGTAATACGATTTTGGCGGATCTTGCTCGTTATCAAGATTCAATCATTATTGTCAACAAAGGCCAACAGATGAAGCTAGTCAAAATTCAAAGTGCCTTCACTTACATTGATATGTCGAACAACTACTTGGAGGGGCCAATACCTAATGAGCTAATGCAATTCAAGGCATTAAATGCTTTGAACTTGTCACATAATGCATTCTTGGGCCATATACCATCATCTGTGTGGAATTTGAAGAATCTTGAGTCAATGGATTTGTCAAACAACTCCTTGAATGGAGAGATTCCTCGAGAGCTTTCAAGTCTATCTTTCCTCGACTATATGAACCTCTCGTTCAATCATTTGGCGGGGGAAATTCCATTAGGTACTCAAATTCAATCATTTGATGTGGATTCCTTTAAAGGGAATGAAGGATTATGTGGACCTCCATTGACCAACAAATGCGACGATGATGGAATGCAGGGGTTGCCACCAGCAGCATCTGAAACACCTCATTCTCAGAATGAGAGTTCAATTGATTGGAGTTTCTTAAGTATGGAGTTGGGATTGATTTTTGGGTTTGGTATTTTCATCCTCCCTGTTATTTGCATGAACAAATTGAGGTTGTGGTATTTCAAACATGTAGATGAAATGCTTTACAGGTTCATCCCTTGTCTTGATTTTGTGTATGAACAACATGAAGGAAAGAGATATAGAACTCTAAGTTTGAGGTACTGA 3108 0.3851 MRSHIFFWLFFIPFSLINTSTYNFAANGYCLDHEHSLLLHLKNNLIFNPMKSSKLVHWNQSDDDCCQWHGVTCKDGHVTSLDLSHESVSEGLNDSSALFSLQYLQSLNLAFNDFHSMIPQELHQLQNLRYLNLSNAGFEGQVPTEISHLTKLVTLDLSSSITSNHSLKLENPNIEMLVESLTDITELYLDGVAISSSGDEWARALSLLKGLRVLSMSSCNLSGPIDSSLAKLTQLIYIDLSSNNLTGPLPSFNRSKNLTYISFFLNHLSGELPSDHFEGLSNLVSIDLGFNSFNGSVPPSVLKLPYLRELKLPYNQLSGVLGEFDNASSSVLEILDLTSNNLEGPIPLSVFNLKTLSFVQLSYNKFNGTIKLDLIRRLTNLTILGLSHNNLFIDVNFKYDHDLSPFPKMRILLLDSCKIREIPSFLRNQSTLLSIHLSENKIEGLIPSWIWQLDSLITLNLSRNNLTGLEGSDLNFSSNLIMGDFSYNQLQGPISFIPKYAIYLDYSSNRFSSFVPPDIGNHLPYIRMLFLSNNNFSGQIHESFCNASTLNLLDLSHNNFVGTIPKCFSALSSSLKMLNLGGNKLRGHIPSTMFQNSCALRFLNLNDNLLGSTIPKSLVNCQELQVLNLGSTIPKSLVNCQELQVLNLGKNALTGKFPCFSSKISTLRVMILRSNKFHGSIECPKCIGEWEMLHIADLASNNFSGKLSAALLNRWKAMMRDEAELGPEFGHLFLDIVDIFQPTRFKDVLQNLNKRLSMKVATLVANMPRSILDQAYVDVATLVANMPRSILDQAYVDGNTILADLARYQDSIIIVNKGQQMKLVKIQSAFTYIDMSNNYLEGPIPNELMQFKALNALNLSHNAFLGHIPSSVWNLKNLESMDLSNNSLNGEIPRELSSLSFLDYMNLSFNHLAGEIPLGTQIQSFDVDSFKGNEGLCGPPLTNKCDDDGMQGLPPAASETPHSQNESSIDWSFLSMELGLIFGFGIFILPVICMNKLRLWYFKHVDEMLYRFIPCLDFVYEQHEGKRYRTLSLRY* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5600 1035 ProSiteProfiles Leucine-rich repeat profile. 455 476 IPR001611 GO:0005515
Psa7g5600 1035 Pfam Leucine rich repeat 407 466 IPR001611 GO:0005515
Psa7g5600 1035 Pfam Leucine rich repeat 549 610 IPR001611 GO:0005515
Psa7g5600 1035 SUPERFAMILY L domain-like 178 496 - -
Psa7g5600 1035 SUPERFAMILY L domain-like 506 941 - -
Psa7g5600 1035 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 1 232 - -
Psa7g5600 1035 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 629 1019 - -
Psa7g5600 1035 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 227 631 - -
Psa7g5600 1035 SMART LRR_typ_2 875 899 IPR003591 -
Psa7g5600 1035 SMART LRR_typ_2 280 304 IPR003591 -
Psa7g5600 1035 SMART LRR_typ_2 232 255 IPR003591 -
Psa7g5600 1035 SMART LRR_typ_2 406 429 IPR003591 -
Psa7g5600 1035 SMART LRR_typ_2 598 621 IPR003591 -
Psa7g5600 1035 SMART LRR_typ_2 125 149 IPR003591 -
Psa7g5600 1035 SMART LRR_typ_2 453 476 IPR003591 -
Psa7g5600 1035 SMART LRR_typ_2 573 596 IPR003591 -
Psa7g5600 1035 Gene3D Ribonuclease Inhibitor 328 500 IPR032675 -
Psa7g5600 1035 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Psa7g5600 1035 PANTHER LRR RECEPTOR-LIKE KINASE 1 232 - -
Psa7g5600 1035 PANTHER LRR RECEPTOR-LIKE KINASE 629 1019 - -
Psa7g5600 1035 PANTHER LRR RECEPTOR-LIKE KINASE 227 631 - -
Psa7g5600 1035 Gene3D Ribonuclease Inhibitor 30 327 IPR032675 -
Psa7g5600 1035 Pfam Leucine Rich Repeat 877 899 IPR001611 GO:0005515
Psa7g5600 1035 SUPERFAMILY L domain-like 30 202 - -
Psa7g5600 1035 Gene3D Ribonuclease Inhibitor 501 951 IPR032675 -
Psa7g5600 1035 PRINTS Leucine-rich repeat signature 456 469 - -
Psa7g5600 1035 PRINTS Leucine-rich repeat signature 875 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5600 Psa-Chr7 477604071 477607320 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5600 8 1003 Receptor kinase-like Gene Family AT1G47890 30.705 1.89e-110 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5600 - - mtr:MTR_4g417270 1251.88