Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0988 ATGAGAGCACACAAACTCTTGTTGTTTTTTATACAATTCTGCTTAATAAACTATAGTGCCAACATCTTTCCAGCAAATGGTTATTTTCTTGGCCATCAGTGTTCCATTGTCCTCCATTTGAAAAATAACCTAATATTCAACTCTACAAAATCCAAAAAGCTTACCCTTTGGAACCAAACTGAAGATTGTTGCCAATGGCATGGGGTGACATGCAACGAGGGGCGTGTTATAGCCCTTGATCTCAGTGAGGAGTCTATCTCGGGAGGACTCGTTAATTCAAGCTCTCTTTTCAGCCTTCAATATCTACAGAGCTTGAATTTGGCTTTCAATAACTTAAGTTCGGTGATTCCTTCGGAGTTGTACAAGCTGAATAATTTACGTTATTTGAACTTGTCTAATGCTGGATTTGAGGGGCAGATTCCAGATGAGATTTTTCACCTCAGAAGGTTAGTTACTCTTGATTTGTCTTCTTCATTTACCTCACGTGATAGGCTGAAACTTGAGAAGCCAGATATAGCAGTGTTTCAAAACCTTACAGATATCACAGAATTGTATCTAGATGGTGTAGCAATATCTGCCAAAGGACAGGAATGGGGTCATGCTTTATCTTCATCGCAGAAGCTACGTGTTTTGAGCATGTCATCATGCAATCTCTCTGGACCTATTGATTCTTCACTAGCAAAGCTTCTGCCACTCACTGTTCTAAAATTGAGCCACAACAACATGTCAAGCGCAGTGCCAAAATCCTTTGTAAATTTCTCCAATTTAGTCACACTAGAGTTAAGAAGTTGTGGCTTGAATGGTTCTTTTCCAAAAGATATCTTCCAAATATCAACGTTGAAGTTCCTTGACATCTCAGACAACCAAGATCTTGGGGGTTCTTTGCCAAACTTCCCACAACATGGTTCTCTTCATGACCTGAATCTTAGCTATACAAATTTCTCAGGAAAGCTTCCAGGTGCAATTTCCAATTTGAAGCAGTTATCTGCAATTGATCTATCTTACTGCCAATTTAATGGTACACTTCCTAGTTCATTCTCAGAACTCAGCCAACTTGTTTATCTAGACTTGTCTTCCAATAACTTTACAGGTTCGCTTCCTTCTTTTAATTTGTCCAAGAATCTCACATATTTATCCCTTTTTAATAATCATTTAAGTGGGGTGTTGCCATCCAGTCATTTTGAGGGCCTTAAAAAGCTTGTCAGCATTGATTTGGGGTTTAATTTTTTCGGTGGGAGTCTCCCCTCATCTCTACTTAAACTCCCATATTTGCGAGAACTTAAACTTCCTTTTAATCAATTCAATGGTTCCTTGGATGAGTTTGTGATTGCCTCCCCTTTGTTAGAAATGCTTGATTTATGTAACAATAATATTCGAGGGCCTATTCCTATGTCTATTTTTAACCTCAGAACACTTCGTGTCATTCAGCTTAAGTCAAATAAGTTTAATGGCACAATACAATTGGACAAGATTCGCAAGCTGAGTAATTTAATTGAACTAGGCCTCTCACATAACAATTTGTCAGTTGATATAAACTTTAGGGATGATCATGACCTGTCACCCTTTCCTCATATGACGCATATAATGTTGGCTTCCTGTAAGTTGAGACGAATTCCTAGTTTCTTGATAAATCAGTCCATATTAATATATCTTGATCTATCTGACAACGGGATCGAAGGACCAATACCTAACTGGATTTCGCAACTTGGATATCTTGCTCATTTGAATCTTTCCAAAAATTTTCTCACACATTTACAAGAAAGTAATACTCTTGTTCGTTTGACAAACCTTTTACTTGTCGATCTTAGTTCCAACCAACTGCAAGAGTCTTTTCCTTTCATTCCAAGCTTTATAACTCATTTGGACTACTCAAACAATAGATTCAACTCTGTCATTCCAATGGACATCGGAAATCATCTCCCTTTCATGAATTTCTTGTCTCTTTCAAACAATAGTTTTCAGGGACAAATCCCTGAATCATTTTGCAATGCTTCAAGTCTTCTCCTGCTAGATCTTTCCCTTAATAACTTTGTGGGGATGATTCCCATGTGTATTACTAAGTTGAGTAACACTCTAAAGGTGTTGCACTTTGGTGGAAACAAACTCCAAGGTTATATTCCTAATACTCTGCCAACTTCATGCACTCTAAAGTTATTGGATCTAAATGACAATCTCTTGGAGGGTACCATTCCAAAATCTTTAGCCAATTGCCAGAAACTACAAGTCCTAAACCTTCAAAAAAATTTATTGAGTGACAGATTTCCATGTTTCTTAACTAATATTTCCACCTTGAGAATCATGGATTTAAGGTCAAACAAACTTCATGGATCAATCGGATGCCCAAGAAGCAGCGGTGATTGGGAAATGCTTCATGTTGTTGATCTAGCCTCCAATAATTTCAGTGGGGCAATACCAGGAGCACTATTAAACACTTGGAAAGCAATGAAGCCTGAATTTGGTCACTTATTTTTTGATCTCGTTGATTACTATGACCAAAAGAATTTCAAGGATTTATTGACACATACGAACAAAAGTATTGTAGCTATATTAGCTAAACTTGTTACAAACGTACCTCGCTCTATCCTTGACCAGACATCTTCCGATAATTATAATACAGGGGAGCTCTCTCGATATCAGGATTCAATTATTATTACCTACAAAGGTAAACAAATAAAGTTGGTAAGAATTCAAAGGGCCTTCACTTACGTGGATATGTCAAGCAACAATTTTGAGGGTCCAATACCAAATGAGCTAATGCAGTTCAAGGGATTGAATGCTCTTAACTTGTCAAATAATGCCCTCTCAGGTCATGTCCCATCATCTATTGGAAATTTGAAGAATCTTGAGTCTTTAGACTTGTCAAACAATTCTTTCAATGGAGAAATTCCAACAGAGCTCGCAAGTCTATCTTTCCTTGCATATTTGAATCTCTCATATAATCACCTGGTGGGGGAAATTCCAAAGGGTACCCAAGTTCAATCATTTGATGCAGATTCCTTTGAAGGGAATGAAGAGTTATTTGGACCTCCACTGACCCATAATTGCAGCAACGATGAAGTGCCAACACCTGAAACACCTCATTCACACACTGAGAGTTCAATTGATTGGACTTTTTTAAGTGTAGAGTTGGGATGTATTTTTGGCTTTGGAATTTTCATCTTACCTCTTATTTTCTGGAGTAGATGGAGGTTGTGGTATTCCAAACGCGTTGATGAGATGCTTCACAGAATCATCCCCCAGCTTGATTTTGCGTACCAACACCGTGGAGGGAAGCGATACAAAATCCTTGTGTGGAGGACCAAATAA 3306 0.3799 MRAHKLLLFFIQFCLINYSANIFPANGYFLGHQCSIVLHLKNNLIFNSTKSKKLTLWNQTEDCCQWHGVTCNEGRVIALDLSEESISGGLVNSSSLFSLQYLQSLNLAFNNLSSVIPSELYKLNNLRYLNLSNAGFEGQIPDEIFHLRRLVTLDLSSSFTSRDRLKLEKPDIAVFQNLTDITELYLDGVAISAKGQEWGHALSSSQKLRVLSMSSCNLSGPIDSSLAKLLPLTVLKLSHNNMSSAVPKSFVNFSNLVTLELRSCGLNGSFPKDIFQISTLKFLDISDNQDLGGSLPNFPQHGSLHDLNLSYTNFSGKLPGAISNLKQLSAIDLSYCQFNGTLPSSFSELSQLVYLDLSSNNFTGSLPSFNLSKNLTYLSLFNNHLSGVLPSSHFEGLKKLVSIDLGFNFFGGSLPSSLLKLPYLRELKLPFNQFNGSLDEFVIASPLLEMLDLCNNNIRGPIPMSIFNLRTLRVIQLKSNKFNGTIQLDKIRKLSNLIELGLSHNNLSVDINFRDDHDLSPFPHMTHIMLASCKLRRIPSFLINQSILIYLDLSDNGIEGPIPNWISQLGYLAHLNLSKNFLTHLQESNTLVRLTNLLLVDLSSNQLQESFPFIPSFITHLDYSNNRFNSVIPMDIGNHLPFMNFLSLSNNSFQGQIPESFCNASSLLLLDLSLNNFVGMIPMCITKLSNTLKVLHFGGNKLQGYIPNTLPTSCTLKLLDLNDNLLEGTIPKSLANCQKLQVLNLQKNLLSDRFPCFLTNISTLRIMDLRSNKLHGSIGCPRSSGDWEMLHVVDLASNNFSGAIPGALLNTWKAMKPEFGHLFFDLVDYYDQKNFKDLLTHTNKSIVAILAKLVTNVPRSILDQTSSDNYNTGELSRYQDSIIITYKGKQIKLVRIQRAFTYVDMSSNNFEGPIPNELMQFKGLNALNLSNNALSGHVPSSIGNLKNLESLDLSNNSFNGEIPTELASLSFLAYLNLSYNHLVGEIPKGTQVQSFDADSFEGNEELFGPPLTHNCSNDEVPTPETPHSHTESSIDWTFLSVELGCIFGFGIFILPLIFWSRWRLWYSKRVDEMLHRIIPQLDFAYQHRGGKRYKILVWRTK* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0988 1101 Gene3D Ribonuclease Inhibitor 296 513 IPR032675 -
Gso1g0988 1101 Gene3D Ribonuclease Inhibitor 514 836 IPR032675 -
Gso1g0988 1101 Gene3D Ribonuclease Inhibitor 852 1019 IPR032675 -
Gso1g0988 1101 Pfam Leucine rich repeat N-terminal domain 38 72 IPR013210 -
Gso1g0988 1101 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 1 1084 - -
Gso1g0988 1101 SMART LRR_typ_2 123 147 IPR003591 -
Gso1g0988 1101 SMART LRR_typ_2 229 252 IPR003591 -
Gso1g0988 1101 SMART LRR_typ_2 99 122 IPR003591 -
Gso1g0988 1101 SMART LRR_typ_2 397 421 IPR003591 -
Gso1g0988 1101 SMART LRR_typ_2 945 973 IPR003591 -
Gso1g0988 1101 SMART LRR_typ_2 522 545 IPR003591 -
Gso1g0988 1101 SMART LRR_typ_2 569 593 IPR003591 -
Gso1g0988 1101 SMART LRR_typ_2 349 371 IPR003591 -
Gso1g0988 1101 SMART LRR_typ_2 594 621 IPR003591 -
Gso1g0988 1101 Gene3D Ribonuclease Inhibitor 32 196 IPR032675 -
Gso1g0988 1101 Pfam Leucine rich repeat 207 266 IPR001611 GO:0005515
Gso1g0988 1101 Pfam Leucine rich repeat 923 982 IPR001611 GO:0005515
Gso1g0988 1101 Gene3D Ribonuclease Inhibitor 197 295 IPR032675 -
Gso1g0988 1101 SUPERFAMILY L domain-like 444 809 - -
Gso1g0988 1101 ProSiteProfiles Leucine-rich repeat profile. 571 592 IPR001611 GO:0005515
Gso1g0988 1101 SUPERFAMILY L domain-like 51 293 - -
Gso1g0988 1101 PANTHER LRR RECEPTOR-LIKE KINASE 1 1084 - -
Gso1g0988 1101 SUPERFAMILY L domain-like 900 995 - -
Gso1g0988 1101 SUPERFAMILY L domain-like 270 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0988 Gso-Chr1 40398086 40402308 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0988 33 1062 Receptor kinase-like Gene Family AT1G47890 33.048 9.05e-126 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0988 - - gmx:102664945 2092.78