Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0129 . . . . . . . . . . . . . Bach6g01096 . Bva02g01351 Car06g02687 Cca01g01326 . . . . . . . . Lal14g0031 . . Lan12g0007 . . . Lasa7g00563 . . . . . Mal7g0634 Mepo2g00664 Mesa13g04809 . Mtr4g0619 . . . . . Pumo7g01175 . Seca4g10558 . Ssu4g2143 . . Trre7g00645 . Vian9g01198 . Vimu9g01259 Viun10g00842 Vivi5g01201 Vra9g1024
Pvu10g0130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g4718 . . . . . . . . . . . . . . . . . . Tsu06g00450 . . . . . .
Pvu10g0131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01564 . . . . . . . . . . . . . . . . . .
Pvu10g0132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g1026
Pvu10g0134 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g1027
Pvu10g0135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g1028
Pvu10g0136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01568 . . Pste6g00571 . . . Spst4g01441 . . . . . . . . . . .
Pvu10g0137 Acco07g1803 Accr6g01541 Adu02g01710 . Aev02g1661 Ahy12g0438 Ahy2g0395 Aip02g01989 Alju05g0372 . Amo02g2138 Apr10g0416 Arst2g02231 . Bisa06g0468 . . Cca01g01296 Dere11g0419 Dod07g1347 Enph10g0918 Glsi07g1776 . . . . . . . . . . . . Lele37g1169 Lele38g1057 Lele39g0244 . . . . . Mibi04g1799 . . . Prci12g0386 . . Pumo7g01165 . Seca4g10550 . Ssu4g2139 Sto1g2410 . . . Vian9g01206 . . Viun10g00821 . Vra9g1029
Pvu10g0138 Acco07g1801 Accr6g01539 Adu02g01709 . Aev02g1660 Ahy12g1753 Ahy2g1501 Aip02g01988 Alju05g0374 . . Apr10g0414 Arst2g02228 . Bisa06g0488 . Car06g02691 Cca01g01295 Dere11g0423 Dod07g1346 Enph10g0920 Glsi07g1772 . . . . Lal14g0032 . . . . . . Lasa7g00567 Lele37g1167 . Lele39g0246 . . Mal7g0640 Mepo2g00666 Mesa13g04807 Mibi04g1797 Mtr4g0621 . Phco1g01574 . . . Pumo7g01163 . Seca4g10548 Spst4g01443 . Sto1g2413 . Trre7g00649 . Vian9g01207 . . Viun10g00820 Vivi5g01181 Vra9g1030
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0129 Chr10 1969596 1971366 -
Bach Bach6g01096 Chr6 9138640 9141301 -
Bva Bva02g01351 Chr02 17233580 17237305 +
Car Car06g02687 Chr06 35335699 35339308 -
Cca Cca01g01326 Chr01 24959987 24965029 -
Lal Lal14g0031 Chr14 443892 447982 -
Lan Lan12g0007 Chr12 63891 66020 -
Lasa Lasa7g00563 Chr7 22481293 22483998 -
Mal Mal7g0634 Chr7 16968958 16971180 -
Mepo Mepo2g00664 Chr2 7964891 7968443 -
Mesa Mesa13g04809 Chr13 76146894 76148437 +
Mtr Mtr4g0619 Chr4 7818967 7822422 -
Pumo Pumo7g01175 Chr7 26531258 26533787 +
Seca Seca4g10558 Chr4 241618400 241624000 +
Ssu Ssu4g2143 Chr4 47380189 47383933 +
Trre Trre7g00645 Chr7 4161590 4164373 -
Vian Vian9g01198 Chr9 25147620 25149885 -
Vimu Vimu9g01259 Chr9 20490526 20492653 -
Viun Viun10g00842 Chr10 10733230 10736815 +
Vivi Vivi5g01201 Chr5 31402755 31405835 +
Vra Vra9g1024 Chr9 12820879 12823032 -
Pvu Pvu10g0130 Chr10 1977918 1980882 -
Lja Lja3g4718 Chr3 89278181 89297308 -
Tsu Tsu06g00450 Chr06 3863586 3865295 +
Pvu Pvu10g0131 Chr10 1996772 1997256 +
Phco Phco1g01564 Chr1 52893676 52914271 +
Pvu Pvu10g0132 Chr10 1998181 2006896 +
Pvu Pvu10g0133 Chr10 2031004 2032962 +
Vra Vra9g1026 Chr9 12838630 12841293 -
Pvu Pvu10g0134 Chr10 2041113 2042993 +
Vra Vra9g1027 Chr9 12860407 12863070 +
Pvu Pvu10g0135 Chr10 2049089 2050824 -
Vra Vra9g1028 Chr9 12897310 12899779 +
Pvu Pvu10g0136 Chr10 2058548 2074962 +
Phco Phco1g01568 Chr1 52995613 53011441 +
Pste Pste6g00571 Chr6 2155754 2198094 +
Spst Spst4g01441 Chr4 52660443 52670373 +
Pvu Pvu10g0137 Chr10 2094836 2100482 +
Acco Acco07g1803 Chr07 34895674 34899323 -
Accr Accr6g01541 Chr6 47955090 47959259 -
Adu Adu02g01710 Chr02 73519066 73525412 -
Aev Aev02g1661 Chr02 18274783 18289797 -
Ahy Ahy12g0438 Chr12 6751141 6754297 +
Ahy Ahy2g0395 Chr2 5347046 5348106 -
Aip Aip02g01989 Chr02 86090429 86095323 -
Alju Alju05g0372 Chr05 5863637 5867543 +
Amo Amo02g2138 Chr02 70469002 70475498 -
Apr Apr10g0416 Chr10 10216080 10221056 -
Arst Arst2g02231 Chr2 72939875 72946129 -
Bisa Bisa06g0468 Chr06 11429083 11429541 +
Cca Cca01g01296 Chr01 23619374 23624701 -
Dere Dere11g0419 Chr11 6936838 6945252 +
Dod Dod07g1347 Chr07 36648885 36653015 -
Enph Enph10g0918 Chr10 11714045 11718560 +
Glsi Glsi07g1776 Chr07 59301527 59307907 -
Lele Lele37g1169 Chr37 21184043 21187876 -
Lele Lele38g1057 Chr38 21925834 21929229 -
Lele Lele39g0244 Chr39 1632751 1636586 +
Mibi Mibi04g1799 Chr04 47535477 47540776 -
Prci Prci12g0386 Chr12 3361480 3368007 +
Pumo Pumo7g01165 Chr7 26143606 26148598 -
Seca Seca4g10550 Chr4 241523370 241528100 -
Ssu Ssu4g2139 Chr4 46778397 46782573 +
Sto Sto1g2410 Chr1 31818038 31821537 +
Vian Vian9g01206 Chr9 25386091 25396169 +
Viun Viun10g00821 Chr10 9958227 9965134 -
Vra Vra9g1029 Chr9 12969613 12974855 +
Pvu Pvu10g0138 Chr10 2117195 2119195 +
Acco Acco07g1801 Chr07 34879037 34883803 -
Accr Accr6g01539 Chr6 47936546 47941526 -
Adu Adu02g01709 Chr02 73484692 73489310 -
Aev Aev02g1660 Chr02 18258328 18265844 -
Ahy Ahy12g1753 Chr12 94967800 94977429 -
Ahy Ahy2g1501 Chr2 80019565 80024307 -
Aip Aip02g01988 Chr02 86068928 86078072 -
Alju Alju05g0374 Chr05 5878367 5882556 +
Apr Apr10g0414 Chr10 10186221 10188487 -
Arst Arst2g02228 Chr2 72905386 72910078 -
Bisa Bisa06g0488 Chr06 12325444 12330781 +
Car Car06g02691 Chr06 35562965 35565620 +
Cca Cca01g01295 Chr01 23612110 23616050 -
Dere Dere11g0423 Chr11 7057990 7060273 +
Dod Dod07g1346 Chr07 36627575 36632591 -
Enph Enph10g0920 Chr10 11726420 11730210 +
Glsi Glsi07g1772 Chr07 59171055 59177247 -
Lal Lal14g0032 Chr14 469846 478388 +
Lasa Lasa7g00567 Chr7 22631606 22633690 +
Lele Lele37g1167 Chr37 21173178 21178148 -
Lele Lele39g0246 Chr39 1643796 1647246 +
Mal Mal7g0640 Chr7 17026392 17030718 +
Mepo Mepo2g00666 Chr2 7987259 7990917 +
Mesa Mesa13g04807 Chr13 76129766 76130927 -
Mibi Mibi04g1797 Chr04 47523229 47526990 -
Mtr Mtr4g0621 Chr4 7831663 7834693 +
Phco Phco1g01574 Chr1 53117932 53119643 +
Pumo Pumo7g01163 Chr7 26122275 26126856 -
Seca Seca4g10548 Chr4 241509950 241512825 -
Spst Spst4g01443 Chr4 52734318 52741380 +
Sto Sto1g2413 Chr1 31831648 31834232 +
Trre Trre7g00649 Chr7 4175820 4176929 +
Vian Vian9g01207 Chr9 25416501 25417858 +
Viun Viun10g00820 Chr10 9899124 9901380 -
Vivi Vivi5g01181 Chr5 29969999 29972896 -
Vra Vra9g1030 Chr9 12980437 12983126 +
Ahy Ahy12g0438 Chr12 6751141 6754297 +
Lja Lja3g4718 Chr3 89278181 89297308 -