Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01582 ATGAGAGGACACATACTTCTGTGCTTTTTTCTTATACCTTTTTTCACAATAAACCATAATGCCAACGTTTTTCCAGCCAATGGCTATTTGCTTGGCAACGAGTGTTCCATTTTGCTCCGTTTGAAAAATAACCTCAGATTCAACCCTGCAATATCCAAAAAACTTACTCTTTGGAATCAAGGTGAAGATTGTTGTCAATGGCATGGGGTGACATGCAAAGAAGGTGGTGTTATAGCCCTTGATCTCAGTGAAGAGTCTATCTCAGGAGGATTTCTTAATTCAAGCCTTCTTTTTGGCCTTCAATATCTTCAAAGCTTGAATTTGGCTTTCAATAACTTCAGTTCTGTGATTCCTTCTGAACTATACAAATTGAATAATTTGAGGTATTTGAACTTTTCAAATGCTGGCTTTGAGGGGCAGATTCCGCATGAGATTTTTCATCTCAGAAGGTTAGTTACTCTTGACTTGTCTTCTTCATTTTCCTCACCTCACAGCCTGAAACTGGCGAAGCCAAATACAGCAATGTTTTTGCAAAACCTTACAGAAATCACAGAATTATATCTAGATGGTATAGCAATATCTGGCAAAGGACAAGAATGGTTTCCTGCTTTATCTTCATTGAACAACTTACGTGTTCTAAGCATGTCATCATGCAATATCTCTGGACCTATTGATGCTTCCCTAGCTAAGCTTCTCTCACTCACTGTACTAAAATTAAGCTACAACAACATCTCTAGCACAGTGCCAGGTTCCTTCACAAATTTATCCAATCTAGTCGTACTACAACTCAGAAGTTGTGGCTTGAATGGTTCTTTTCCCAAAGATATCTTCCAAATACCATCATTGAAGGTCCTTGACATCTCAGACAATCAAGATCTTATGGGTTCTTTGCCAAACTTCAAACCAAGTGGTTCTCTTCGTGACATGAATCTTAGCCAGACAAGTTTCACAGGAATGCTTCCGGGTGCAATTTCTAACTTGAAACATTTATCTACAATTGATCTATCTTTTTGCAAATTTAATGGAACACTTCCCAGTTCAATGTCAGAACTCACCCAACTAGTTTATCTGGACTTGTCTTCCAATAACTTTTCAGGTCCACTCCCTTCTTTTAATATGTCCAAGAATCTCTCATATTTATCCCTCTTTCATAATAGTTTGACAGGGGTGTTACCATCTAGTCATTTTGAGGGCCTTGAAAATCTTGCCAACATTGATCTAGGGTTTAACTTTTTCAAAGGAAGGCTTCCCTCATCTCTACTTAAACTTCCATGTTTGCGAGAACTTAAACTTCCCTTTAATCAACTCACTGGTGTCTTGGATGAATTTGTGATGACCTCACCTACACTGGAGATGCTTGATTTGGGTAGTAATAATTTGGAAGGACCGATTCCTTTGTCTATTTTTAACCTTAGAACACTTCGTGTCATTCAACTCAATTCAAACAAGTTTAATGGCACAGTACAATTGGACATGATTCGAAGGTTGAGTAATCTAACTATATTAAGCCTCTCGCATAACAATTTGTCAGTTGATATATTCTCTAGATATGATCATGATCCGTCACCCTTTCCTGTTCTAAGAAATATAATGTTGGCATCTTGCAAGTTGAGAGGAATCCCTAGTTTTGTGAAAACTCAATCATCGTTACTATATCTCGACCTTGCTGACAACCAGATTGAAGGAACAATACCTTACTGGGTCTGGCAACTTGAATATGTTGTTCACTTGAACCTTTCCAAAAATTTCCTAACAAAATTGGAAGGAAATGTCTGGAACTTTAGTTCAAACCTTTTGATTATTGATCTTAGTTCCAACCAACTACAAGGGCCATTGCCTTTCCTTCCAACGTTTGTAAATTATTTGGACTACTCAAACAATAGATTTAATTCTGTCCTTCCAGCGGACATTGGAAATCTTATCCCTTTCATATTAGTGTTGTCTCTTTCAAACAACAATTTTCAGGGAAAAATCCCTGAATCCTTTCTCAATGCTTCAAGTCTTCATCTGCTGGATCTTTCTCGCAATAACTTTGTTGGAACGATTCCCAAGTGTTTTGTTAAGATGAGTAGCACTCTTCGGGTGTTAAACTTAGGTGGAAACAAACTTGAAGGATATATTCCTGATACTTTGCCAACCTCATGTACTCTAAAGTTTTTGGACCTAAATGACAATCTCTTGGAGGGTACTATCCCAACATCCTTAGCTTATTGCCATCAACTACAAGTCCTGAACCTTCGAAGAAATTCATTAACCGACAAATTTCCTTGTTTCTTAAGTAATATTTCCACCTTACGAATCATGGATTTACGGTTAAACAAACTTCACGGATCAATTGGATGCCCAAAAAGCAGTGGTGATTGGGAAATGCTCCATATTGTTGATGTAGCCTCCAATAATTTCAATGGTACAATACCAGGACCCCTATTGAAGAGTTGGAAAGCAATGATGCGAGACAATGTTAATGTCGGACCAGAATTTGGCCACTTATTCACTGATATCATTGATCACTATGATCCCAAGAATTATAAGGATTTAGTGTCACACTTAGACAAAAGAATTGTAGCAAAGTTAGCTAAACTTGTTACAAACGTATCTCGATCTTTTCTTGACCAGGGGTCCGTAGATTTTAGTGAAATTGACGGTTCTCGATATCAAAATTCAATTATTATTACAAATAAAGGTCAACAAATAAAATTGGACAAAATCCAGAGAGCCTTCACTTACGTGGATATGTCAAGCAACAATTTTGAGGGTCCAATACCAAGTGAGTTAATGCAGTTCAAGGCAATGCTTGCCCTTAACTTGTCAAATAATGCCCTCTCAGGTCATATCCCATCATCGATTGAAAATTTGAAGAATCTTGAATCCTTAGACTTGTCAAACAATTCTTTAAATGGAGAAATCCCTGGAGAGCTGGCTAGTCTAAGTTTTCTTGCATATGTGAATCTCTCAAACAATCACTTGGTGGGTGAAATTCCGAAGGGCACCCAGATTCAATCATTTGATGGAGATTCCTTTGAAGGAAATGAAAAGTTATGTGGACCTCCACTGACCCGTAATTGCAGCAATGATGGAATGCCAACACCTGAAACACCTCAATCTCATACTCAGAGTTCAATTGATTGGAATTTATTAAGCGCAGAATTGGGATTTGTTTTTGGCTTTGGAATTTTCATTCTGCCTCTTCTTTTCTGGAAGAGATGGAGGTTTTGGTATTCCAAACTGGTGGATAAGATGCTTCACAAGTTCATTCCCATGCTTGATTTTGTGTATGAACACCAACGTGGGAAGACATATAGAACTCTAAGGAGGAGGTACTGA 3324 0.3785 MRGHILLCFFLIPFFTINHNANVFPANGYLLGNECSILLRLKNNLRFNPAISKKLTLWNQGEDCCQWHGVTCKEGGVIALDLSEESISGGFLNSSLLFGLQYLQSLNLAFNNFSSVIPSELYKLNNLRYLNFSNAGFEGQIPHEIFHLRRLVTLDLSSSFSSPHSLKLAKPNTAMFLQNLTEITELYLDGIAISGKGQEWFPALSSLNNLRVLSMSSCNISGPIDASLAKLLSLTVLKLSYNNISSTVPGSFTNLSNLVVLQLRSCGLNGSFPKDIFQIPSLKVLDISDNQDLMGSLPNFKPSGSLRDMNLSQTSFTGMLPGAISNLKHLSTIDLSFCKFNGTLPSSMSELTQLVYLDLSSNNFSGPLPSFNMSKNLSYLSLFHNSLTGVLPSSHFEGLENLANIDLGFNFFKGRLPSSLLKLPCLRELKLPFNQLTGVLDEFVMTSPTLEMLDLGSNNLEGPIPLSIFNLRTLRVIQLNSNKFNGTVQLDMIRRLSNLTILSLSHNNLSVDIFSRYDHDPSPFPVLRNIMLASCKLRGIPSFVKTQSSLLYLDLADNQIEGTIPYWVWQLEYVVHLNLSKNFLTKLEGNVWNFSSNLLIIDLSSNQLQGPLPFLPTFVNYLDYSNNRFNSVLPADIGNLIPFILVLSLSNNNFQGKIPESFLNASSLHLLDLSRNNFVGTIPKCFVKMSSTLRVLNLGGNKLEGYIPDTLPTSCTLKFLDLNDNLLEGTIPTSLAYCHQLQVLNLRRNSLTDKFPCFLSNISTLRIMDLRLNKLHGSIGCPKSSGDWEMLHIVDVASNNFNGTIPGPLLKSWKAMMRDNVNVGPEFGHLFTDIIDHYDPKNYKDLVSHLDKRIVAKLAKLVTNVSRSFLDQGSVDFSEIDGSRYQNSIIITNKGQQIKLDKIQRAFTYVDMSSNNFEGPIPSELMQFKAMLALNLSNNALSGHIPSSIENLKNLESLDLSNNSLNGEIPGELASLSFLAYVNLSNNHLVGEIPKGTQIQSFDGDSFEGNEKLCGPPLTRNCSNDGMPTPETPQSHTQSSIDWNLLSAELGFVFGFGIFILPLLFWKRWRFWYSKLVDKMLHKFIPMLDFVYEHQRGKTYRTLRRRY 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01582 1107 ProSiteProfiles Leucine-rich repeat profile. 954 977 IPR001611 GO:0005515
Phco1g01582 1107 FunFam Tyrosine-sulfated glycopeptide receptor 1 97 397 - -
Phco1g01582 1107 Pfam Leucine rich repeat 934 989 IPR001611 GO:0005515
Phco1g01582 1107 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515
Phco1g01582 1107 Pfam Leucine rich repeat 646 703 IPR001611 GO:0005515
Phco1g01582 1107 Pfam Leucine rich repeat 305 364 IPR001611 GO:0005515
Phco1g01582 1107 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 595 823 - -
Phco1g01582 1107 FunFam Tyrosine-sulfated glycopeptide receptor 1 857 1026 - -
Phco1g01582 1107 Gene3D Ribonuclease Inhibitor 519 616 IPR032675 -
Phco1g01582 1107 SMART LRR_typ_2 423 445 IPR003591 -
Phco1g01582 1107 SMART LRR_typ_2 952 976 IPR003591 -
Phco1g01582 1107 SMART LRR_typ_2 351 373 IPR003591 -
Phco1g01582 1107 SMART LRR_typ_2 571 594 IPR003591 -
Phco1g01582 1107 SMART LRR_typ_2 496 516 IPR003591 -
Phco1g01582 1107 SMART LRR_typ_2 255 279 IPR003591 -
Phco1g01582 1107 SMART LRR_typ_2 100 124 IPR003591 -
Phco1g01582 1107 SMART LRR_typ_2 231 254 IPR003591 -
Phco1g01582 1107 PRINTS Leucine-rich repeat signature 354 367 - -
Phco1g01582 1107 PRINTS Leucine-rich repeat signature 952 965 - -
Phco1g01582 1107 SUPERFAMILY L domain-like 37 291 - -
Phco1g01582 1107 SUPERFAMILY RNI-like 309 777 - -
Phco1g01582 1107 Gene3D Ribonuclease Inhibitor 617 1027 IPR032675 -
Phco1g01582 1107 SUPERFAMILY L domain-like 907 1014 - -
Phco1g01582 1107 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 360 1023 IPR046956 -
Phco1g01582 1107 Gene3D Ribonuclease Inhibitor 297 518 IPR032675 -
Phco1g01582 1107 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Phco1g01582 1107 SUPERFAMILY L domain-like 496 640 - -
Phco1g01582 1107 Gene3D Ribonuclease Inhibitor 201 296 IPR032675 -
Phco1g01582 1107 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01582 Phco-Chr1 53251275 53254598 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02242 3 48775689 48779012 Phco1g01582 1 53251275 53254598 PCT