Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g1143 . Acco06g2400 . Accr5g00722 . Adu03g03222 . . . . . . . . . Alju03g0983 . . . . . Arst3g04203 . Bach11g00727 . Bisa07g0627 . . . . . . . Dere02g2898 . . . Enph4g0539 . Glsi11g2639 . . . . . . . . . . . . . . . . . . . . . Lapu3g02868 . Lasa7g03543 . . . . Lele13g0590 Lele14g0490 Lele15g1893 Lele16g1925 . . . . . Mepo2g03493 . Mesa13g01654 . Mibi06g0762 . . . . . Phco4g02413 . Prci3g0710 . Psa1g4933 . Pste3g03389 . . . . . Pumo6g01636 . Pvu2g2169 . Rops2g01798 . Seca12g05169 . Spst3g00389 . . . . . . . Trre7g03987 . . . Vian1g03009 . Vifa1g10746 . Vimu11g03301 . Viun3g01723 . Vivi5g05004 . .
Vvi3g1144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1147 . . . . . . Aed10g2072 . . . . . . . . . . . Apr3g1978 . . . . . . . . . . . Cca09g01446 . . . . . . . . . . . Gma08g00658 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g4842 . . . . . . . Mtr2g0182 . . . . . . Psa7g2311 . . . . . . . . . . . . . . . . . Ssu5g1901 . . . . Tpr2g2826 . . . Tsu08g04294 . . . . . . . . . . Vra7g1507 .
Vvi3g1148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1150 . . . . . . . . . . . . . . . . . . Apr3g1979 . . . . . . . . . . . . . . . . . . . . . . . Gma08g00659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g1143 Chr3 15420521 15426698 +
Acco Acco06g2400 Chr06 20210992 20216382 -
Accr Accr5g00722 Chr5 31195251 31200497 +
Adu Adu03g03222 Chr03 118634756 118645772 +
Alju Alju03g0983 Chr03 37238035 37243471 +
Arst Arst3g04203 Chr3 117365269 117369355 +
Bach Bach11g00727 Chr11 5539889 5543887 +
Bisa Bisa07g0627 Chr07 15497210 15509335 +
Dere Dere02g2898 Chr02 32585955 32596406 +
Enph Enph4g0539 Chr4 19097945 19102989 +
Glsi Glsi11g2639 Chr11 19165241 19170214 -
Lapu Lapu3g02868 Chr3 51618975 51624330 +
Lasa Lasa7g03543 Chr7 601665702 601671611 -
Lele Lele13g0590 Chr13 18118953 18124281 +
Lele Lele14g0490 Chr14 16575471 16580437 +
Lele Lele15g1893 Chr15 11653150 11658617 -
Lele Lele16g1925 Chr16 11614008 11618962 -
Mepo Mepo2g03493 Chr2 44482632 44488088 -
Mesa Mesa13g01654 Chr13 19806572 19810897 +
Mibi Mibi06g0762 Chr06 26021214 26026828 +
Phco Phco4g02413 Chr4 45322901 45327053 +
Prci Prci3g0710 Chr3 9294506 9300600 +
Psa Psa1g4933 Chr1 364881185 364884346 -
Pste Pste3g03389 Chr3 26674600 26679792 +
Pumo Pumo6g01636 Chr6 24013630 24018355 +
Pvu Pvu2g2169 Chr2 37162284 37166832 +
Rops Rops2g01798 Chr2 27745973 27749682 +
Seca Seca12g05169 Chr12 139967250 139971091 -
Spst Spst3g00389 Chr3 6800228 6804031 +
Trre Trre7g03987 Chr7 48068623 48074190 -
Vian Vian1g03009 Chr1 49583278 49587450 +
Vifa Vifa1g10746 Chr1 1807994332 1807997473 -
Vimu Vimu11g03301 Chr11 53326370 53330492 +
Viun Viun3g01723 Chr3 12443661 12448644 -
Vivi Vivi5g05004 Chr5 150625386 150631633 +
Vvi Vvi3g1144 Chr3 15476934 15478198 -
Vvi Vvi3g1145 Chr3 15480490 15481800 -
Vvi Vvi3g1146 Chr3 15520676 15521254 +
Vvi Vvi3g1147 Chr3 15529867 15532548 -
Aed Aed10g2072 Chr10 24511444 24517317 -
Apr Apr3g1978 Chr3 35817481 35819064 -
Cca Cca09g01446 Chr09 37755766 37756807 -
Gma Gma08g00658 Chr08 5452867 5454638 -
Mal Mal4g4842 Chr4 127902760 127903965 -
Mtr Mtr2g0182 Chr2 1875546 1877183 +
Psa Psa7g2311 Chr7 163856951 163857988 +
Ssu Ssu5g1901 Chr5 55846917 55847969 -
Tpr Tpr2g2826 Chr2 32815485 32817044 -
Tsu Tsu08g04294 Chr08 60898800 60900452 -
Vra Vra7g1507 Chr7 32396894 32398452 -
Vvi Vvi3g1148 Chr3 15548411 15549403 +
Vvi Vvi3g1149 Chr3 15559272 15562058 -
Vvi Vvi3g1150 Chr3 15582944 15585027 +
Apr Apr3g1979 Chr3 35820528 35821872 +
Gma Gma08g00659 Chr08 5457046 5459240 +
Vvi Vvi3g1151 Chr3 15597050 15598147 +
Vvi Vvi3g1152 Chr3 15617726 15621748 +
Acco Acco06g2400 Chr06 20210992 20216382 -
Accr Accr5g00722 Chr5 31195251 31200497 +
Adu Adu03g03222 Chr03 118634756 118645772 +
Alju Alju03g0983 Chr03 37238035 37243471 +
Arst Arst3g04203 Chr3 117365269 117369355 +
Bach Bach11g00727 Chr11 5539889 5543887 +
Bisa Bisa07g0627 Chr07 15497210 15509335 +
Dere Dere02g2898 Chr02 32585955 32596406 +
Enph Enph4g0539 Chr4 19097945 19102989 +
Glsi Glsi11g2639 Chr11 19165241 19170214 -
Lapu Lapu3g02868 Chr3 51618975 51624330 +
Lasa Lasa7g03543 Chr7 601665702 601671611 -
Lele Lele13g0590 Chr13 18118953 18124281 +
Lele Lele14g0490 Chr14 16575471 16580437 +
Lele Lele15g1893 Chr15 11653150 11658617 -
Lele Lele16g1925 Chr16 11614008 11618962 -
Mepo Mepo2g03493 Chr2 44482632 44488088 -
Mesa Mesa13g01654 Chr13 19806572 19810897 +
Mibi Mibi06g0762 Chr06 26021214 26026828 +
Phco Phco4g02413 Chr4 45322901 45327053 +
Prci Prci3g0710 Chr3 9294506 9300600 +
Pste Pste3g03389 Chr3 26674600 26679792 +
Pumo Pumo6g01636 Chr6 24013630 24018355 +
Pvu Pvu2g2169 Chr2 37162284 37166832 +
Rops Rops2g01798 Chr2 27745973 27749682 +
Seca Seca12g05169 Chr12 139967250 139971091 -
Spst Spst3g00389 Chr3 6800228 6804031 +
Trre Trre7g03987 Chr7 48068623 48074190 -
Vian Vian1g03009 Chr1 49583278 49587450 +
Vifa Vifa1g10746 Chr1 1807994332 1807997473 -
Vimu Vimu11g03301 Chr11 53326370 53330492 +
Viun Viun3g01723 Chr3 12443661 12448644 -
Vivi Vivi5g05004 Chr5 150625386 150631633 +