Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03301 ATGGCTTCTTCTATCAGTCTCTCCACTCCTTTCTACCGCCCTAGCGTATGCAAACAATTGAAATTGTTTACTGGGTTGCACAAATTCTCTCTCAATGGACATGGGTCGGATTTGGCCTTTGTCCAACTCAACTCCAGTGTCTCCAGTGCTACTTGTAGAATTAAAGCTACATTGACCTCTGGACGAGGAGTCTTGGGATCTTATCCCAACAGCAATGGTGTGGGAACTGAAGGGCAACGTGATGTTGTAGCATTTGGAACTCCGGGAATAGACACAGCAGTGCCAGCAGGCAGTGGTTTTTCTGATGATGATGACGAGTATGACTTCGACACTCCAACAGAAGGTTTTGCATCCGTTCCGGAGGCCATTGAAGACGTTAGGAATGGAAAGATGGTTTTGGTTGTAGATGACGAGGATAGGGAAAATGAAGGAGACGTAATAATGGCTGCGGAGTTGGTTACACCTGAGGCCATGGCTTTTATTGTGAAGCATGGAACTGGGATAGTTTGTATAAGCATGAAGGAGGAAGATTTGGAGAGATTGGAACTTCCTTTGATGGTAAACAGTCAGTATAATGATGAGAAACTTCGCACAGCGTTCACTGTAACAGTGGATGCTAAACATGGTACTACCACGGGGGTGTCAGCTCGTGATAGGGCAACGACAGTCTTGGCCCTTGCATCCAAAGATTCCAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAATGTACAGGGAGGGTGGTGTGCTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCCATACTAGCTGGTCTGAATCCTGCAGCAGTTCTGTGTGAGATTGTGGATGATGATGGTTCAATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTAAAAATTGTATCTATTGCTGACTTGATAAGGTATAGAAGGAAGAGAGATAAACTGGTAGAGCCTGCTGGTTCTGCAGTAATACCAACAATGTGGGGGCCATTTACAGCTAACTGCTATAGATCGCTTTTAGATGGCATTGAGCATATTACAATGGTTAAGGGTGACATTGGTGATGGGCATGATGTACTTGTGAGGGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTTCTCTTGCAATGCAACAGATTGAAACTGCTGGTAGAGGTGTATTGGTCTATCTTCGTGGACATGAAGGAAGGGGCATTGGGTTGGGCCACAAACTTCGTGCCTATAACCTACAGGATGATGGACGGGACACTGTAGAGGCTAATGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAGTATGGAATTGGTGCACAGATTTTGAGAGACTTGGGTGTTCGTTCTATGAAGCTAATGACAAATAATCCAGCAAAGTATGTGGGGCTCAAAGGTTATGGTTTGACAATTTCCGGTAGGATACCATTGTTATCACTTATCACAAAAGAGAACAAGAAATACTTAGAGACCAAACGTGAGAAATTGGGTCACGTATATGGCTCAGAATTTAACAGCAGATTGAACTATCCAGACAGTGGCAATGGTAAAGCCGGCAGTGGTGATGATTCTAATGCTGCTCCTGGCCTATAA 1632 0.4485 MASSISLSTPFYRPSVCKQLKLFTGLHKFSLNGHGSDLAFVQLNSSVSSATCRIKATLTSGRGVLGSYPNSNGVGTEGQRDVVAFGTPGIDTAVPAGSGFSDDDDEYDFDTPTEGFASVPEAIEDVRNGKMVLVVDDEDRENEGDVIMAAELVTPEAMAFIVKHGTGIVCISMKEEDLERLELPLMVNSQYNDEKLRTAFTVTVDAKHGTTTGVSARDRATTVLALASKDSKPSDFNRPGHIFPLMYREGGVLKRAGHTEASVDLAILAGLNPAAVLCEIVDDDGSMARLPKLRQFAERENLKIVSIADLIRYRRKRDKLVEPAGSAVIPTMWGPFTANCYRSLLDGIEHITMVKGDIGDGHDVLVRVHSECLTGDIFGSARCDCGNQLSLAMQQIETAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLLSLITKENKKYLETKREKLGHVYGSEFNSRLNYPDSGNGKAGSGDDSNAAPGL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03301 543 SUPERFAMILY YrdC/RibB 115 317 IPR017945 -
Vimu11g03301 543 Hamap GTP cyclohydrolase-2 [ribA]. 319 515 IPR000926 GO:0003935|GO:0009231
Vimu11g03301 543 Gene3D DHBP synthase 105 320 - -
Vimu11g03301 543 PANTHER GTP CYCLOHYDROLASE II-RELATED 114 515 - -
Vimu11g03301 543 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 117 314 IPR000422 GO:0008686|GO:0009231
Vimu11g03301 543 CDD GTP_cyclohydro2 320 511 IPR000926 GO:0003935|GO:0009231
Vimu11g03301 543 NCBIfam GTP cyclohydrolase II 326 512 IPR000926 GO:0003935|GO:0009231
Vimu11g03301 543 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 114 318 IPR000422 GO:0008686|GO:0009231
Vimu11g03301 543 Gene3D GTP cyclohydrolase II 321 491 IPR036144 -
Vimu11g03301 543 Pfam GTP cyclohydrolase II 326 489 IPR032677 -
Vimu11g03301 543 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 121 313 IPR000422 GO:0008686|GO:0009231
Vimu11g03301 543 SUPERFAMILY RibA-like 319 490 IPR036144 -
Vimu11g03301 543 FunFam Riboflavin biosynthesis protein RibBA 321 492 - -
Vimu11g03301 543 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 107 320 - -
Vimu11g03301 543 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 115 511 IPR016299 GO:0009231
Vimu11g03301 543 MobiDBLite consensus disorder prediction 520 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03301 Vimu-Chr11 53326370 53330492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03301 K14652 - gmx:100791378 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03301 11 53326370 53330492 Vimu11g03301 11 53326370 53330492 ECH
Vimu11g03301 11 53326370 53330492 Vimu2g00434 2 2496924 2499433 PCT