Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1151 ATGCATTGGGCCTCTCATTCCGATCATGGCTTCCTCACCCTCCTCATTGAGAATGAAGTTGGGGGGCTTCAAGTGGAGCACAAGGGCAAGTGGTTCAATGCGAATGCCATTCCCAACTCCTTTTTAGTCAACACCGGTGACCAACTTGAGATTCTGAGCAATGGCAAGTACATGAGTGTTATACATCATGTTGTGGTCAACAACAAAGCGACACGAATATCCCTGGCTATTGCAAATAGACCATTGTTGGACGGGCTTTTTTAA 264 0.4621 MHWASHSDHGFLTLLIENEVGGLQVEHKGKWFNANAIPNSFLVNTGDQLEILSNGKYMSVIHHVVVNNKATRISLAIANRPLLDGLF* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1151 87 SUPERFAMILY Clavaminate synthase-like 3 84 - -
Vvi3g1151 87 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 4 77 - -
Vvi3g1151 87 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 1 81 IPR005123 -
Vvi3g1151 87 Pfam 2OG-Fe(II) oxygenase superfamily 5 77 IPR044861 -
Vvi3g1151 87 Gene3D - 1 86 IPR027443 -
Vvi3g1151 87 FunFam Uncharacterized protein 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1151 Vvi-Chr3 15597050 15598147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1151 4 76 Glycosyltransferase AT5G59530 41.096 3.64e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1151 - - vvi:100246869 128.642