Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02868 ATGGCCTCATCTATCAGTCTCTCCACTCCTTTCTACCGCCCCAGATGTAGCGTATGCAAACAATTGAACTTGTTCACTGGGTTGCACAAGCTCTCACTTGATGGACATGGGTCGGATTTGGCCATTGTCCAACTCAACTCTAGAGTCTCCAGTACTACTTTTAGAATTAAAGCTACATTGACTTCTGGACGAGGAGTCTTGGGATCTTATCCAAACAGCAATGGTGTGAGAACCGAGGGGCAACGTGATGTCGCAGCATTTGGAACTCCGCGAACAGAAACGGCAGTGCCAGCAGGCAGTGGTTTTTCTGATGATGATGACGAGTATGACTTCGACAGTCCAACAGAAGGTTTTGCTTCCGTACCGGAGGCCATCGAAGACGTTAGGAATGGAAAGATGGTAGTGGTTGTAGATGACGAGGATAGGGAGAATGAAGGAGACTTGATAATGGCTGCGGAGTTGGCTACACCTGAGGCCATGGCTTTTATTGTGAAGCATGGAACTGGGATAGTTTGTATAAGCATGAAGGAGGAAGATTTGGAGAGATTGGACCTTCCTTTGATGGTTAACAGTCAGTATAATGACGAGAAACTTCGCACAGCTTTCACTGTAACAGTGGACGCCAAACACGGTACTACCACAGGGGTGTCAGCTCGTGATAGGGCTACTACAGTCTTGGCTCTTGCATCCAAAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGGGAGGGTGGTGTGCTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGTCATTCTTGCTGGTTTGAATCCTGCAGCAGTTCTGTGTGAGATTGTGGATGATGACGGTTCAATGGCTAGATTACCTAAGCTTCGCGAGTTTGCAGAGCGTGAAAATTTAAAAATTGTATCTATTGCTGACTTAATAAGATATAGAAGGAAGAGAGATAAACTAGTAGAGCCTGCTGGTTCTGCAGTAATACCAACAACGTGGGGACCATTTACAGCTAACTGCTACAGGTCGCTTTTAGATGGCATTGAGCATATTACAATGGTTAAGGGAGACATTGGTGATGGACACGATATACTTGTGAGGGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAACCAGCTTTCTCTTGCAATGCAACAGATTGAGACTGCTGGTAGAGGTGTATTGGTCTATCTTCGTGGACATGAAGGAAGGGGCATTGGGTTGGGCCACAAACTTCGTGCCTATAACCTACAGGATGATGGACGGGACACTGTAGAGGCTAATGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAGTATGGAATTGGTGCACAGATTTTGAGGGACTTAGGTGTTCGTTCTATGAAGCTAATGACAAACAATCCAGCAAAATATGTGGGGCTCAAAGGTTATGGTTTGACAATTTCCGGTAGGATACCATTGTTATCACTTGTCACAAAAGAGAACAAGAGATACTTAGAGACCAAACGTGTGAAAATGGGTCACGTATATGGCTTGGAATATAACAGCAAATTGAACTATCCAGACAGTGGCAATGGTAAAGCCGGCAGCGGTGATGATTCTGATGATGCTCCTGGCTTATAA 1638 0.453 MASSISLSTPFYRPRCSVCKQLNLFTGLHKLSLDGHGSDLAIVQLNSRVSSTTFRIKATLTSGRGVLGSYPNSNGVRTEGQRDVAAFGTPRTETAVPAGSGFSDDDDEYDFDSPTEGFASVPEAIEDVRNGKMVVVVDDEDRENEGDLIMAAELATPEAMAFIVKHGTGIVCISMKEEDLERLDLPLMVNSQYNDEKLRTAFTVTVDAKHGTTTGVSARDRATTVLALASKDSKPSDFNRPGHIFPLKYREGGVLKRAGHTEASVDLVILAGLNPAAVLCEIVDDDGSMARLPKLREFAERENLKIVSIADLIRYRRKRDKLVEPAGSAVIPTTWGPFTANCYRSLLDGIEHITMVKGDIGDGHDILVRVHSECLTGDIFGSARCDCGNQLSLAMQQIETAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLLSLVTKENKRYLETKRVKMGHVYGLEYNSKLNYPDSGNGKAGSGDDSDDAPGL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02868 545 Hamap GTP cyclohydrolase-2 [ribA]. 321 517 IPR000926 GO:0003935|GO:0009231
Lapu3g02868 545 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 117 513 IPR016299 GO:0009231
Lapu3g02868 545 PANTHER GTP CYCLOHYDROLASE II-RELATED 116 516 - -
Lapu3g02868 545 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 123 315 IPR000422 GO:0008686|GO:0009231
Lapu3g02868 545 Gene3D DHBP synthase 107 322 - -
Lapu3g02868 545 Gene3D GTP cyclohydrolase II 323 493 IPR036144 -
Lapu3g02868 545 MobiDBLite consensus disorder prediction 526 545 - -
Lapu3g02868 545 FunFam Riboflavin biosynthesis protein RibBA 323 494 - -
Lapu3g02868 545 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 119 316 IPR000422 GO:0008686|GO:0009231
Lapu3g02868 545 NCBIfam GTP cyclohydrolase II 328 514 IPR000926 GO:0003935|GO:0009231
Lapu3g02868 545 Pfam GTP cyclohydrolase II 328 491 IPR032677 -
Lapu3g02868 545 CDD GTP_cyclohydro2 322 513 IPR000926 GO:0003935|GO:0009231
Lapu3g02868 545 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 109 322 - -
Lapu3g02868 545 SUPERFAMILY RibA-like 321 492 IPR036144 -
Lapu3g02868 545 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 116 320 IPR000422 GO:0008686|GO:0009231
Lapu3g02868 545 SUPERFAMILY YrdC/RibB 117 319 IPR017945 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02868 Lapu-Chr3 51618975 51624330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02868 K14652 - gmx:100791686 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02868 3 51618975 51624330 Lapu3g02868 3 51618975 51624330 ECH
Lapu3g02868 3 51618975 51624330 Lapu6g01088 6 10853643 10859385 PCT